Gene detail information of Glyur000017s00002384.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75820.10Leucine-rich receptor-like protein kinase family protein
NRCAD42335.10hypernodulation aberrant root formation protein [Lotus japonicus]
COGYP_004775215.11.00E-49RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprottr|Q9SYQ8|CLV1_ARATH0Receptor protein kinase CLAVATA1 (Precursor)
trEMBLtr|Q8GRU6|Q8GRU6_LOTJA0LRR receptor-like kinase {ECO:0000313|EMBL:BAC41327.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00017106006109610+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.12.4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002384.1PF08263.7LRRNT_232744.80E-10
Glyur000017s00002384.1PF00560.28LRR_12963160.36
Glyur000017s00002384.1PF13855.1LRR_84875464.30E-07
Glyur000017s00002384.1PF13516.1LRR_65825940.43
Glyur000017s00002384.1PF00069.20Pkinase6998555.70E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.555
SRR1783600control9.689
SRR1783602moderate drought stress9.239
SRR1811619moderate drought stress9.352

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.784
DRR006520Root Summer glycyrrhizin high producing strain22.645
DRR006521Root Winter glycyrrhizin high producing strain1.715
DRR006522Root Winter glycyrrhizin high producing strain1.630
DRR006523Root Summer glycyrrhizin low producing strain37.701
DRR006524Root Summer glycyrrhizin low producing strain37.445
DRR006525Leaf Summer glycyrrhizin high producing strain23.371
DRR006526Leaf Summer glycyrrhizin high producing strain23.197

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.432
SRR2868004Drought Stress(Tissue:root)111.222
SRR2967015Control (Tissue:root)79.161

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.865
SRR9715740Leave26.684
SRR9715741Leave31.655
SRR9715739Root13.377
SRR9715742Root37.967
SRR9715743Root30.961

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.725
SRR8749028MeJA induced 9h2.843
SRR8749029MeJA induced 9h2.926
SRR8749030Uninduced0.350
SRR8749031Uninduced0.224
SRR8749032Uninduced2.676

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.978
SRR8400027Control-Root16.418

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved