Gene detail information of Glyur000017s00002392.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21400.1 | 7.00E-32 | SHI-related sequence3 |
| NR | XP_006590877.1 | 2.27E-72 | PREDICTED: protein SHI RELATED SEQUENCE 1-like [Glycine max] |
| Swissprot | tr|Q9SD40|SRS1_ARATH | 1.00E-43 | Protein SHI RELATED SEQUENCE 1 |
| trEMBL | tr|K7LP71|K7LP71_SOYBN | 7.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12101.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 157676 | 158938 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SRS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002392.1 | PF05142.7 | DUF702 | 17 | 154 | 2.10E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.638 |
| SRR1783600 | control | 9.685 |
| SRR1783602 | moderate drought stress | 10.170 |
| SRR1811619 | moderate drought stress | 10.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.557 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.337 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.342 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.033 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.657 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.779 |
| SRR2967015 | Control (Tissue:root) | 1.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 1.264 |
| SRR9715743 | Root | 1.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.316 |
| SRR8749028 | MeJA induced 9h | 0.292 |
| SRR8749029 | MeJA induced 9h | 0.954 |
| SRR8749030 | Uninduced | 1.157 |
| SRR8749031 | Uninduced | 1.104 |
| SRR8749032 | Uninduced | 0.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.882 |
| SRR8400027 | Control-Root | 2.212 |