Gene detail information of Glyur000017s00002396.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G21390.10Coatomer, alpha subunit
NRXP_004507488.10PREDICTED: coatomer subunit alpha-1-like isoform X1 [Cicer arietinum]
COGNP_487506.12.00E-37hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprottr|Q94A40|COPA1_ARATH0Coatomer subunit alpha-1
trEMBLtr|I1LPY8|I1LPY8_SOYBN0Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00017169793175116-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


cellular_component

GO:0030117  membrane coat

GO:0030126  COPI vesicle coat


molecular_function

GO:0005198  structural molecule activity

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002396.1PF00400.27WD4044792.00E-07
Glyur000017s00002396.1PF00400.27WD40841211.10E-09
Glyur000017s00002396.1PF00400.27WD401261636.30E-11
Glyur000017s00002396.1PF00400.27WD401962318.60E-08
Glyur000017s00002396.1PF00400.27WD402422767.30E-07
Glyur000017s00002396.1PF04053.9Coatomer_WDAD3407725.80E-133
Glyur000017s00002396.1PF06957.6COPI_C82412221.30E-178


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.418
SRR1783600control35.513
SRR1783602moderate drought stress29.902
SRR1811619moderate drought stress29.651

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.824
DRR006520Root Summer glycyrrhizin high producing strain33.704
DRR006521Root Winter glycyrrhizin high producing strain36.836
DRR006522Root Winter glycyrrhizin high producing strain35.837
DRR006523Root Summer glycyrrhizin low producing strain28.661
DRR006524Root Summer glycyrrhizin low producing strain28.736
DRR006525Leaf Summer glycyrrhizin high producing strain9.715
DRR006526Leaf Summer glycyrrhizin high producing strain9.753

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.809
SRR2868004Drought Stress(Tissue:root)41.505
SRR2967015Control (Tissue:root)37.803

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.375
SRR9715740Leave17.474
SRR9715741Leave16.358
SRR9715739Root40.186
SRR9715742Root38.704
SRR9715743Root39.299

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.527
SRR8749028MeJA induced 9h23.327
SRR8749029MeJA induced 9h19.232
SRR8749030Uninduced7.909
SRR8749031Uninduced13.466
SRR8749032Uninduced13.824

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.214
SRR8400027Control-Root52.344

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved