Gene detail information of Glyur000017s00002413.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34640.10squalene synthase 1
NRBAA13084.10squalene synthase [Glycyrrhiza glabra]
COGYP_004346033.11.00E-78farnesyl-diphosphate farnesyltransferase [Fluviicola taffensis DSM 16823]
Swissprottr|P53799|FDFT_ARATH0Squalene synthase
trEMBLtr|Q42761|Q42761_GLYGL0Squalene synthase {ECO:0000313|EMBL:BAA13084.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00017271005278059+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00801FDFT1 EC:2.5.1.21 Steroid biosynthesis map00100
Sesquiterpenoid and triterpenoid biosynthesismap00909


Gene Ontology

biological_process

GO:0008610  lipid biosynthetic process

GO:0009058  biosynthetic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004310  farnesyl-diphosphate farnesyltransferase activity

GO:0016740  transferase activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002413.1PF00494.14SQS_PSY453139.10E-42


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control106.031
SRR1783600control106.836
SRR1783602moderate drought stress54.739
SRR1811619moderate drought stress54.399

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain83.433
DRR006520Root Summer glycyrrhizin high producing strain83.020
DRR006521Root Winter glycyrrhizin high producing strain22.849
DRR006522Root Winter glycyrrhizin high producing strain22.203
DRR006523Root Summer glycyrrhizin low producing strain31.013
DRR006524Root Summer glycyrrhizin low producing strain31.309
DRR006525Leaf Summer glycyrrhizin high producing strain25.501
DRR006526Leaf Summer glycyrrhizin high producing strain25.278

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)212.680
SRR2868004Drought Stress(Tissue:root)121.736
SRR2967015Control (Tissue:root)91.153

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.305
SRR9715740Leave33.531
SRR9715741Leave30.562
SRR9715739Root23.663
SRR9715742Root79.076
SRR9715743Root72.001

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.342
SRR8749028MeJA induced 9h28.728
SRR8749029MeJA induced 9h33.922
SRR8749030Uninduced15.319
SRR8749031Uninduced10.265
SRR8749032Uninduced10.557

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root154.051
SRR8400027Control-Root196.603

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved