Gene detail information of Glyur000017s00002417.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34680.22.00E-38GATA transcription factor 3
NRXP_003607047.12.95E-142GATA transcription factor [Medicago truncatula]
Swissprottr|Q9FH57|GATA5_ARATH6.00E-51GATA transcription factor 5
trEMBLtr|G7JJU1|G7JJU1_MEDTR1.00E-142GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:AES89244.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00017293951295745+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0045893  positive regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002417.2PF00320.22GATA2082412.40E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.486
SRR1783600control16.789
SRR1783602moderate drought stress15.963
SRR1811619moderate drought stress15.896

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.467
DRR006520Root Summer glycyrrhizin high producing strain32.626
DRR006521Root Winter glycyrrhizin high producing strain105.590
DRR006522Root Winter glycyrrhizin high producing strain101.845
DRR006523Root Summer glycyrrhizin low producing strain70.201
DRR006524Root Summer glycyrrhizin low producing strain69.266
DRR006525Leaf Summer glycyrrhizin high producing strain44.271
DRR006526Leaf Summer glycyrrhizin high producing strain47.595

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.481
SRR2868004Drought Stress(Tissue:root)42.995
SRR2967015Control (Tissue:root)48.847

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.225
SRR9715740Leave148.460
SRR9715741Leave110.659
SRR9715739Root77.924
SRR9715742Root58.585
SRR9715743Root60.118

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.772
SRR8749028MeJA induced 9h21.093
SRR8749029MeJA induced 9h25.139
SRR8749030Uninduced17.342
SRR8749031Uninduced11.491
SRR8749032Uninduced35.832

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.100
SRR8400027Control-Root38.076

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved