Gene detail

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Gene detail information of Glyur000017s00002418.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36220.1	0	ferulic acid 5-hydroxylase 1
NR	XP_003607058.1	0	Ferulate 5-hydroxylase [Medicago truncatula]
COG	YP_007126612.1	1.00E-35	Unspecific monooxygenase [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q42600\|C84A1_ARATH	0	Cytochrome P450 84A1
trEMBL	tr\|G7JJV2\|G7JJV2_MEDTR	0	Cytochrome P450 family monooxygenase {ECO:0000313\|EMBL:AES89255.1}

Sequence

Transcript Sequence

>Glyur000017s00002418.1
ATGCTTTTTCTCCTTTTCGCTCTCTCTGTTTTCGTTGTCTTCTTACTTCGCCTAAGAAGAAAACTCCCATACCCACCAGGCCCAAAAGGGCTACCCATCATAGGGAACATGNTGATGATGGACCAACTAACCCACCATGGTCTGGCCCGGCTCGCCGAAAAGTACGGTGGGCTTTGCCACCTCCAAATGGGCTCCCTCCACATCGTCGCCGTTTCAACACCAGAAATGGCCCGCGAAGTCCTTCANGCCCAAGACAACGTCTTCGCAAACCGCCCCGCGAATGTCGCAATCACCTACCTGACCTACGACCGGGCCGACATGGCATTTGCGAATTACGGCCCGTTTTGGAGGCAGATGCGTAAAATCTGNGTGATGAAGCTTTTCAGCCGCAAACGGGCCGAGTCGTGGGCCTCCGTACGAGAGGAGGTTGAGGGAACGNTTCGAACCGTTGCAGCGAAAACCGGTTTGTCTGTTAACCTGGGCGAGCTGGTTTTCGCTCTAACGAGGAGCATCACATTCAAGGCCGCGTTTGGGTCCAACTTGGACAAAGGGCAAGAGGAATTCATGGGAATCTTGCAAGAGTTCTCGAAGCTCTTTGGTGCTTTCAACATTGCGGATTTTATTCCGTGGTTGGGTTGGTTTCGTGCACAGGAGTTTAACAAGAGAATGGCTAGTGCAAGACAAGCACTTGATGTGTTTATTGATGAGATCATTGATGATCACGTGACAAAGAGGAAGAACAACATGGAGAATAAGAAGGATGATGATGAGAACGAGGTTGATGCAGANATGGTTGATGAGCTTATGGTGTTCCTTGATGAGAATGGTACCCGTTTGGACAATTCACAATCGGCGCTTCAGCTTACTAGAGACAACATCAAAGCACTTATCATGGATGTCATGTTTGGTGGAACCGAGACAGTAGCATCNGTGATAGAATGGACCATGGCAGAGCTCATGAAGAGCCCAATGGACCTTCNCAAGGCCCAACAAGAACTAATGGATGTTGTGGGCCTGGATCGAAGGTTCAACGAATCGGATCTAGACAAGTTGACTTTTCTCAAATGTGCGGTCAAAGAAACCTTGCGGCTNCACCCACCGATTCCGTTACTCCTCCATGAGACCGCAGAAGACACTGCTGTCGCCGGTTACTTCATCCCAAAAGCGACACGTGTCTGGATCAACGCGTGGGCAATTGGACGCGACAAAAGCGCGTGGGACGAGCCAGAGAAATTCAACCCGTCGAGGTTCCTGAACGATGACATGCCAGATTTCAAAGGGAGCAACTTCGAGTTCATTCCTTTTGGGTCGGGTCGAAGGTCGTGCCCGGGTATGCAACTTGGACTCTATGCTGTGGAAATGACTGCGGCTAACTTGCTTCACTGTTTCAAGTGGGAGTTACCAAATGGAATGAAGCCAAGTGAGCTTGATATGAATGACGTGTTTGGCCTCACCGCTCCAAGAGCCGTTCAACTTGTTGCGGTACCCAGTTATCGTCTGAATTGTCCTCTTGATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00017	303685	306832	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP84A1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09755	CYP84A, F5H	EC:1.14.-.-	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000017s00002418.1	PF00067.17	p450	25	487	3.60E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.045
SRR1811619	moderate drought stress	0.050

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.060
SRR2868004	Drought Stress(Tissue:root)	0.180
SRR2967015	Control (Tissue:root)	0.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.187
SRR9715740	Leave	0.016
SRR9715741	Leave	0.192
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.129
SRR8749028	MeJA induced 9h	0.129
SRR8749029	MeJA induced 9h	0.195
SRR8749030	Uninduced	0.155
SRR8749031	Uninduced	0.166
SRR8749032	Uninduced	0.171

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.011
SRR8400027	Control-Root	0.004