Gene detail information of Glyur000017s00002435.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G16500.10arginine decarboxylase 1
NRBAE71251.10putative arginine decarboxylase [Trifolium pratense]
COGYP_007054049.12.00E-171arginine decarboxylase [Rivularia sp. PCC 7116]
Swissprottr|Q43075|SPE1_PEA0Arginine decarboxylase
trEMBLtr|Q2PEV1|Q2PEV1_TRIPR0Arginine decarboxylase {ECO:0000256|RuleBase:RU003740}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00017394888397029+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01583E4.1.1.19 EC:4.1.1.19 Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0006527  arginine catabolic process

GO:0008295  spermidine biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008792  arginine decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000017s00002435.1PF02784.11Orn_Arg_deC_N1273881.90E-55
Glyur000017s00002435.1PF00278.17Orn_DAP_Arg_deC4285935.60E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.599
SRR1783600control54.214
SRR1783602moderate drought stress20.709
SRR1811619moderate drought stress20.379

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain74.556
DRR006520Root Summer glycyrrhizin high producing strain73.708
DRR006521Root Winter glycyrrhizin high producing strain4.813
DRR006522Root Winter glycyrrhizin high producing strain4.586
DRR006523Root Summer glycyrrhizin low producing strain75.178
DRR006524Root Summer glycyrrhizin low producing strain75.631
DRR006525Leaf Summer glycyrrhizin high producing strain24.864
DRR006526Leaf Summer glycyrrhizin high producing strain24.658

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)263.550
SRR2868004Drought Stress(Tissue:root)327.979
SRR2967015Control (Tissue:root)294.223

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave126.726
SRR9715740Leave189.368
SRR9715741Leave152.231
SRR9715739Root389.502
SRR9715742Root174.456
SRR9715743Root214.013

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h227.441
SRR8749028MeJA induced 9h78.024
SRR8749029MeJA induced 9h108.464
SRR8749030Uninduced168.508
SRR8749031Uninduced83.480
SRR8749032Uninduced88.295

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root121.227
SRR8400027Control-Root169.178

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved