Gene detail information of Glyur000017s00002440.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G21250.1 | 5.00E-135 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | XP_007131745.1 | 0 | hypothetical protein PHAVU_011G038400g [Phaseolus vulgaris] |
| COG | YP_004270459.1 | 1.00E-74 | aldehyde reductase [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|P28475|S6PD_MALDO | 6.00E-148 | NADP-dependent D-sorbitol-6-phosphate dehydrogenase |
| trEMBL | tr|V7AE23|V7AE23_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03739.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00017 | 431662 | 440002 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00011 | E1.1.1.21, AKR1 | EC:1.1.1.21 | Pentose and glucuronate interconversions | map00040 |
| Fructose and mannose metabolism | map00051 | |||
| Galactose metabolism | map00052 | |||
| Glycerolipid metabolism | map00561 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000017s00002440.1 | PF00248.16 | Aldo_ket_red | 29 | 295 | 3.70E-52 |
| Glyur000017s00002440.1 | PF00248.16 | Aldo_ket_red | 299 | 542 | 2.70E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.698 |
| SRR1783600 | control | 29.021 |
| SRR1783602 | moderate drought stress | 17.659 |
| SRR1811619 | moderate drought stress | 17.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.802 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.663 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.889 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.348 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.912 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 106.485 |
| SRR2868004 | Drought Stress(Tissue:root) | 100.048 |
| SRR2967015 | Control (Tissue:root) | 69.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 59.710 |
| SRR9715740 | Leave | 52.742 |
| SRR9715741 | Leave | 64.827 |
| SRR9715739 | Root | 6.232 |
| SRR9715742 | Root | 24.998 |
| SRR9715743 | Root | 21.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.230 |
| SRR8749028 | MeJA induced 9h | 27.839 |
| SRR8749029 | MeJA induced 9h | 49.230 |
| SRR8749030 | Uninduced | 33.311 |
| SRR8749031 | Uninduced | 16.185 |
| SRR8749032 | Uninduced | 24.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 65.728 |
| SRR8400027 | Control-Root | 61.188 |