Gene detail information of Glyur000018s00003690.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G78870.18.00E-81ubiquitin-conjugating enzyme 35
NRKEH38621.14.92E-109ubiquitin-conjugating enzyme [Medicago truncatula]
COGYP_008797956.12.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q94A97|UBC35_ARATH1.00E-102Ubiquitin-conjugating enzyme E2 35
trEMBLtr|A0A072VAH5|A0A072VAH5_MEDTR2.00E-109Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:KEH38621.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000187021274804-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10580UBE2N, BLU, UBC13 EC:2.3.2.23 Ubiquitin mediated proteolysis map04120
Toll and Imd signaling pathwaymap04624


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000018s00003690.1PF00179.21UQ_con9514.90E-05
Glyur000018s00003690.1PF00179.21UQ_con641743.10E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control262.106
SRR1783600control263.696
SRR1783602moderate drought stress177.638
SRR1811619moderate drought stress177.513

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain326.852
DRR006520Root Summer glycyrrhizin high producing strain321.045
DRR006521Root Winter glycyrrhizin high producing strain262.263
DRR006522Root Winter glycyrrhizin high producing strain255.911
DRR006523Root Summer glycyrrhizin low producing strain269.664
DRR006524Root Summer glycyrrhizin low producing strain269.524
DRR006525Leaf Summer glycyrrhizin high producing strain168.991
DRR006526Leaf Summer glycyrrhizin high producing strain168.934

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)355.373
SRR2868004Drought Stress(Tissue:root)348.990
SRR2967015Control (Tissue:root)311.221

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave245.633
SRR9715740Leave273.052
SRR9715741Leave275.621
SRR9715739Root163.107
SRR9715742Root195.232
SRR9715743Root180.817

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h386.743
SRR8749028MeJA induced 9h351.582
SRR8749029MeJA induced 9h383.442
SRR8749030Uninduced266.058
SRR8749031Uninduced150.764
SRR8749032Uninduced272.706

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root304.900
SRR8400027Control-Root300.495

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved