Gene detail information of Glyur000018s00003695.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14940.10phosphoenolpyruvate carboxylase 3
NRXP_003596385.10Phosphoenolpyruvate-carboxylase [Medicago truncatula]
COGYP_008045770.10phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
Swissprottr|Q02735|CAPP_MEDSA0Phosphoenolpyruvate carboxylase
trEMBLtr|G7IH71|G7IH71_MEDTR0Phosphoenolpyruvate carboxylase {ECO:0000313|EMBL:AES66636.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00018106966112795-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01595ppc EC:4.1.1.31 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0015977  carbon fixation


molecular_function

GO:0003824  catalytic activity

GO:0008964  phosphoenolpyruvate carboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000018s00003695.1PF00311.12PEPcase1629718.00E-303


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.121
SRR1783600control17.008
SRR1783602moderate drought stress14.587
SRR1811619moderate drought stress14.425

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.393
DRR006520Root Summer glycyrrhizin high producing strain26.351
DRR006521Root Winter glycyrrhizin high producing strain113.831
DRR006522Root Winter glycyrrhizin high producing strain110.343
DRR006523Root Summer glycyrrhizin low producing strain38.370
DRR006524Root Summer glycyrrhizin low producing strain37.931
DRR006525Leaf Summer glycyrrhizin high producing strain5.288
DRR006526Leaf Summer glycyrrhizin high producing strain5.409

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)171.220
SRR2868004Drought Stress(Tissue:root)173.091
SRR2967015Control (Tissue:root)112.632

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.736
SRR9715740Leave2.213
SRR9715741Leave4.766
SRR9715739Root4.453
SRR9715742Root14.693
SRR9715743Root12.292

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.774
SRR8749028MeJA induced 9h101.232
SRR8749029MeJA induced 9h57.870
SRR8749030Uninduced85.081
SRR8749031Uninduced71.856
SRR8749032Uninduced104.889

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root57.964
SRR8400027Control-Root58.889

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved