Gene detail information of Glyur000018s00003703.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14930.23.00E-176Uroporphyrinogen decarboxylase
NRXP_006592936.10PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like isoform X3 [Glycine max]
COGYP_005067117.11.00E-138uroporphyrinogen III decarboxylase [Arthrospira platensis NIES-39]
Swissprottr|Q93ZB6|DCUP1_ARATH0Uroporphyrinogen decarboxylase 1, chloroplastic (Precursor)
trEMBLtr|I1LV68|I1LV68_SOYBN0Uroporphyrinogen decarboxylase {ECO:0000256|RuleBase:RU000554}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00018155644162540-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01599hemE, UROD EC:4.1.1.37 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0006779  porphyrin-containing compound biosynthetic process


molecular_function

GO:0004853  uroporphyrinogen decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000018s00003703.1PF01208.12URO-D553911.20E-108


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.258
SRR1783600control10.369
SRR1783602moderate drought stress8.471
SRR1811619moderate drought stress7.495

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.850
DRR006520Root Summer glycyrrhizin high producing strain15.339
DRR006521Root Winter glycyrrhizin high producing strain7.715
DRR006522Root Winter glycyrrhizin high producing strain7.127
DRR006523Root Summer glycyrrhizin low producing strain11.585
DRR006524Root Summer glycyrrhizin low producing strain12.169
DRR006525Leaf Summer glycyrrhizin high producing strain31.170
DRR006526Leaf Summer glycyrrhizin high producing strain29.438

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.073
SRR2868004Drought Stress(Tissue:root)14.887
SRR2967015Control (Tissue:root)14.675

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.164
SRR9715740Leave43.380
SRR9715741Leave34.541
SRR9715739Root8.270
SRR9715742Root9.293
SRR9715743Root8.899

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.494
SRR8749028MeJA induced 9h17.852
SRR8749029MeJA induced 9h7.402
SRR8749030Uninduced10.344
SRR8749031Uninduced3.401
SRR8749032Uninduced4.314

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.982
SRR8400027Control-Root22.503

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved