Gene detail information of Glyur000018s00003709.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53320.1 | 1.00E-151 | tubby like protein 7 |
| NR | XP_003540491.1 | 0 | PREDICTED: tubby-like F-box protein 7-like [Glycine max] |
| Swissprot | tr|Q93VI8|TLP7_ARATH | 0 | Tubby-like F-box protein 7 |
| trEMBL | tr|I1LV72|I1LV72_SOYBN | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 171574 | 182789 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003709.1 | PF00646.28 | F-box | 44 | 91 | 5.10E-06 |
| Glyur000018s00003709.1 | PF01167.13 | Tub | 108 | 378 | 2.60E-86 |
| Glyur000018s00003709.1 | PF01167.13 | Tub | 385 | 606 | 2.10E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.415 |
| SRR1783600 | control | 29.740 |
| SRR1783602 | moderate drought stress | 26.964 |
| SRR1811619 | moderate drought stress | 27.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.162 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.299 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.226 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.964 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.405 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.807 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.757 |
| SRR2967015 | Control (Tissue:root) | 40.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.585 |
| SRR9715740 | Leave | 30.104 |
| SRR9715741 | Leave | 43.685 |
| SRR9715739 | Root | 56.784 |
| SRR9715742 | Root | 53.094 |
| SRR9715743 | Root | 51.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.863 |
| SRR8749028 | MeJA induced 9h | 51.029 |
| SRR8749029 | MeJA induced 9h | 41.004 |
| SRR8749030 | Uninduced | 67.222 |
| SRR8749031 | Uninduced | 21.246 |
| SRR8749032 | Uninduced | 27.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 41.197 |
| SRR8400027 | Control-Root | 45.011 |