Gene detail

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Gene detail information of Glyur000018s00003746.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14840.2	1.00E-155	Leucine-rich repeat transmembrane protein kinase
NR	KHN19486.1	0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	4.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGN2\|Y3148_ARATH	0	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (Precursor)
trEMBL	tr\|I1LV96\|I1LV96_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G36190.1}

Sequence

Transcript Sequence

>Glyur000018s00003746.1
ATGAACACGACTTTCCCTCTAAACATTTTCCATCTTCTGCTTCTTGCCTTTTGTTTGATCTCTTCTTTTGCTAGTGGGGCTACTCTTGCAAGTTATGAGGGACATAGTGACCTCACACGCAACTACCTCAACGGTACACTCCCTCCACAATGGGGCTCCATGAATCTTGTCAACATTTCCCTTCTTGGAAACCGACTAACGGGTCCAATNCCAAGAGAATTTGGAAACATCACCACCCTGAAAAGCTTGGTCCTGGAGTTCAATCAATTATCTGGAAAGCTTCCTCCAGAGCTTGGGAATCTTCCCCAGNTCGAAAGACTGCATCTTACCTCCAACTATTTTACTGGAACTTTACCATCAACATTTGCTAAGCTCACTAAACTGAAGCACGTTCGACTTGGCGACAATCAATTCTCTGGAACTATACCAAATTTCATTCAGAGCTGGACAAGTCTTGAGAGGCTGGTGATGCAAGGGAGTGGTTTGAGTGGACCAATTCCTTCTGGAATTTCATTTCTGAAAAACCTCACTGACTTGAGAATAAGTGACTTGAAAGGATCAGATTCTCATTTTCCACAACTTATNAACTTGACAAATATGCAAACACTAGTACTAAGGAGTTGCAATCTTATAGGAACAGCTCCTGAATATCTTGGAAATATGACAAATTTAAGATCATTAGATCTCAGTTTTAACAAATTAAGTGGACAGATTCCGAACACCTTGGGTGGCCTAGAGAACATAAATATACTATACTTAACTGGAAACCTTTTTACTGGACCACTGCCCAATTGGATTGATAGACCAGATTACACAGATCTTTCATATAACAACTTGAGCATCGAAAACCCAGAGCACTTGACATGTCAACAGGGAAGCGTGGAAATAACTCCTTGGTACTCTCTCCATATAAATTGTGGTGGGAAGCTCATAACTTCAAATAGAAGCTTCACATATGATGATGATTCAAAGGAAGCTGGACCAGCAAGATTTCGCCGGACNGGATCAAACTGGGCATTTAGCAACACTGGTCACTTCTTTGATAGTAGCCGTGTGGACTACCATACTTGGTCTAATACAACTAAGCTTGCTATGGACAATGGTGAACTGTATATGGATGCACGNGTTTCCCCCCTTTCTCTCACATATTATGGATTCTGCATGGGAAACGGAAACTACATAGTAAATCTCCATTTTGCTGAGATAATGTTCACCGATGATCAAACATATTACAGCCTTGGAAGGCGTGTATTTGACATCTATATTCAGGATTTTGACATTGCAAAAGAAGCCGGGGGAGTTGGTAAGGCACTTGTTAAGAAGTTCACTACAATTGTGGCCAGTAACACCTTGGAGATCCGCTTTCATTGGGCTGGGAAAGGGACAACTGGTATCCCNTTTGGATCAGTACATGGTCCTCTTATATCAGCTATATCGGTTGATCCTGACTTTACACCCCCAGTGGAAAATGGAAGTAGCAATAGCATACCTGTGCGGTCTGTTGTAGCAGTTGTGGTTGCAGNAGCACTAGTCATCATGATGGTATTTGGTATAGCTTGGTGGAGAGGATGTCTGCGACAGATAGGTTCATTAGAAAGAGAGCTAAGGGGTTTAGATCTGCAAACTGGGTTATTTACCTTNCGACAAATCAAAGCAGCAACTAACAACTTTGATATTGCCTTTAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGTTGGATTGGTCGACAAGGAAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGGAGAGTCAAGACTAAAGATAGTTCACAGNGACATCAAGGCCACTAATGTGTTACTGGATAAAGATCTCAACCCAAAGATTTCTGATTTTGGTTTGGCCAAGCTCAAAGATGAGGGCTATACCCACATCACCACCAGAGTAGCTGGAACTTATGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTTAGTGGGAAGAACAACACCATGAACTGGCCAAAGGAAGAATGCTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAAGAAGAAGGAAATATAATGGACCTAGTTGATGAGAGGCTGGGTGAAGATTTCAAAAAAGAGGAAGTAATGGTCATGATTAATGTGGCACTTTTATGCACTCATGTTTCTCCAATGCAGAGGCCCACCATGTCTTTAGTTGTAAGCATGCTTGAAGGGAAAAATGTTGTTCAAGAGGTGGTACCTAACACAAGCCAAGTTTTTGAAGGCAAGAAGTTGGAAATGATCCAACAGCATTACCAGCAGAGAGAAAAAAATAGTACCCCTGAGATTCAAGAAGAGAGCATCTCAATAGATGAAACTGCAGCATTTATGTCTAATACAGATCTACAATCTATCGAAATGGATGATTCTTACTGCATTAGATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	501632	509364	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.1
Carbohydrate-Active enzymes Family	CBM57

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003746.1	PF13855.1	LRR_8	199	257	8.40E-08
Glyur000018s00003746.1	PF11721.3	Malectin	300	478	1.10E-46
Glyur000018s00003746.1	PF00069.20	Pkinase	574	683	1.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.222
SRR1783600	control	0.207
SRR1783602	moderate drought stress	0.356
SRR1811619	moderate drought stress	0.343

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.686
DRR006520	Root Summer glycyrrhizin high producing strain	0.701
DRR006521	Root Winter glycyrrhizin high producing strain	0.090
DRR006522	Root Winter glycyrrhizin high producing strain	0.088
DRR006523	Root Summer glycyrrhizin low producing strain	0.223
DRR006524	Root Summer glycyrrhizin low producing strain	0.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.166
SRR2868004	Drought Stress(Tissue:root)	4.337
SRR2967015	Control (Tissue:root)	5.498

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.396
SRR9715740	Leave	0.283
SRR9715741	Leave	0.327
SRR9715739	Root	0.100
SRR9715742	Root	0.517
SRR9715743	Root	0.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.175
SRR8749028	MeJA induced 9h	0.231
SRR8749029	MeJA induced 9h	0.308
SRR8749030	Uninduced	0.061
SRR8749031	Uninduced	0.068
SRR8749032	Uninduced	0.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.960
SRR8400027	Control-Root	1.073