Gene detail

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Gene detail information of Glyur000018s00003753.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	2.00E-110	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	KEH38560.1	0	cytochrome P450 family monooxygenase [Medicago truncatula]
COG	YP_003265754.1	4.00E-39	cytochrome P450 [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	8.00E-161	Geraniol 8-hydroxylase
trEMBL	tr\|A0A072VK77\|A0A072VK77_MEDTR	0	Cytochrome P450 family monooxygenase {ECO:0000313\|EMBL:KEH38560.1}

Sequence

Transcript Sequence

>Glyur000018s00003753.1
ATGGACTTTGTAATAACCACTATGCTACTTCTAATTATCCTCCTATTAACATGCATTGCTACATTAATTGTTCTTTCTCAAAAACCAAACCACAAAAAGCTGCTTCCACCAGGACCTTCACCACTCACCCTTATATCAAACCTCTTTGAGCTTGGCAAAAAGCCACAACACTCATTGGCCAAGCTAGCAAACACACATGGCCCAATAATGCGTTTAAAGCTAGGCCAAGTAACCCACCATAAAATAGCCAAAGAGGTTCTCAAAACACACGACAACTCATTCTCAAGCAGAACAATCCCACAAGCCGTTTCAGTTCTCAACCACCAACATTTTAGCCTACCCTTCATCCCAATTTGTGATCTTTGGAGAGATTTAAGGAGAATTTGCAACAACCAATTGTTCTCACACAATACCCTTGATGCAAGCCAAGACCTTAGGCGCAAGAAGCTTCAAGAGCTACTCAATGATGTTAATAAGAGTAGCATGGTTGGTGAAGAAGTGGATATTGGGAGAGCTGCTTTTAAGACTTCAATGAATTTTTTATCAAACACTTTTTTCTCTTTGGATTTTGTTAACTCTGCAGGGGAAACAGAGGAGTATAGGGATATTGTGGAGAATCTTGTGAGGGCTATTGGGACTCCTAATTTGGTTGATTTTTTCCCTGTTTTGAAGATGGTTGATCCTCAAGGGATTAGGAGAACCTCTGCTGCTTNTAGATTGGAGTTGAGAANAGAAGGGGGAGAGTATGTAATGAAGAATGACATGTTGGATACATTGCTCAATATCTCTCAAGAGAATGGCCGTCAAAAGATGGACAACGAAAAGATTAAACATTTGTTTCTTGATCTATTTGTTGCGGGAACGGATACAACTTCTTATGCAATAGAAAGGGCAATGGCAGAGTTAATCAACAACCCACATGCAATGTCAAAAGCCAAAGCAGAGCTTGAACAAGTCATTGGTAAATGCAATCCAATTGAGGAATCAGACATTGCTAAACTCCCATACTTGCAAGCAATAATAAAAGAAACACTACGATTGCACCCATCAGCTCCACTTTTGCTACCTAGAAAAGCCTTGATTGATGTGGAAATTCATGGATACACTATCCCAAAGGGTGCACAAGTCCTAATCAATGAGTGGGCCATGGGAAGGAACTCAAACATTTGGGATAACCCGAATTCATTCTCACCTGAGAGGTTTTTGGGGTCAGAGATTAATTTCAAGGGACAAAATTTTCAATTGACACCGTTTGGTAGTGGAAGACGAATATGCCCTGGCTTGCCATTGGCTATTAGAATGTTACACATGATGTTAGGATCGTTAATCAACGTTTTTGATTGGAAATTGGAAAATGGTGTGAAAAAAGGAGACATGGATATGGATCAACCCTTGCGAGCTATTCCG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00018	553603	556052	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000018s00003753.1	PF00067.17	p450	36	461	3.00E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.101
SRR1783600	control	0.204
SRR1783602	moderate drought stress	0.178
SRR1811619	moderate drought stress	0.132

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.173
SRR2868004	Drought Stress(Tissue:root)	0.474
SRR2967015	Control (Tissue:root)	0.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.022
SRR9715741	Leave	0.063
SRR9715739	Root	0.053
SRR9715742	Root	0.063
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.019
SRR8400027	Control-Root	0.138