Gene detail information of Glyur000018s00003756.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78600.1 | 2.00E-74 | light-regulated zinc finger protein 1 |
| NR | XP_004488990.1 | 3.60E-174 | PREDICTED: probable salt tolerance-like protein At1g78600-like [Cicer arietinum] |
| Swissprot | tr|Q9SYM2|BBX22_ARATH | 2.00E-91 | B-box zinc finger protein 22 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|V7BU72|V7BU72_PHAVU | 1.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:ESW21509.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00018 | 570497 | 573728 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000018s00003756.1 | PF00643.19 | zf-B_box | 54 | 95 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.568 |
| SRR1783600 | control | 3.615 |
| SRR1783602 | moderate drought stress | 5.651 |
| SRR1811619 | moderate drought stress | 5.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.400 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.402 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.531 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.818 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.333 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.601 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.947 |
| SRR2967015 | Control (Tissue:root) | 8.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.409 |
| SRR9715740 | Leave | 24.890 |
| SRR9715741 | Leave | 12.640 |
| SRR9715739 | Root | 8.441 |
| SRR9715742 | Root | 5.806 |
| SRR9715743 | Root | 5.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.471 |
| SRR8749028 | MeJA induced 9h | 11.547 |
| SRR8749029 | MeJA induced 9h | 11.314 |
| SRR8749030 | Uninduced | 7.239 |
| SRR8749031 | Uninduced | 4.323 |
| SRR8749032 | Uninduced | 6.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.469 |
| SRR8400027 | Control-Root | 7.462 |