Gene detail information of Glyur000019s00002090.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G04040.1 | 0 | Patatin-like phospholipase family protein |
NR | XP_003521151.2 | 0 | PREDICTED: triacylglycerol lipase SDP1-like [Glycine max] |
COG | YP_693301.1 | 4.00E-77 | hypothetical protein ABO_1581 [Alcanivorax borkumensis SK2] |
Swissprot | tr|Q9LZA6|SDP1_ARATH | 0 | Triacylglycerol lipase SDP1 |
trEMBL | tr|I1JN82|I1JN82_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G28660.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00019 | 48306 | 52733 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000019s00002090.1 | PF11815.3 | DUF3336 | 92 | 227 | 3.50E-28 |
Glyur000019s00002090.1 | PF01734.17 | Patatin | 234 | 425 | 1.30E-14 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 1.169 |
SRR1783600 | control | 1.185 |
SRR1783602 | moderate drought stress | 2.029 |
SRR1811619 | moderate drought stress | 2.028 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 1.546 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 1.569 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 8.376 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 8.285 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 2.640 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 2.644 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.118 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.173 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 4.487 |
SRR2868004 | Drought Stress(Tissue:root) | 12.142 |
SRR2967015 | Control (Tissue:root) | 13.560 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 20.236 |
SRR9715740 | Leave | 23.180 |
SRR9715741 | Leave | 26.529 |
SRR9715739 | Root | 0.961 |
SRR9715742 | Root | 1.826 |
SRR9715743 | Root | 1.508 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 11.217 |
SRR8749028 | MeJA induced 9h | 13.765 |
SRR8749029 | MeJA induced 9h | 8.476 |
SRR8749030 | Uninduced | 5.380 |
SRR8749031 | Uninduced | 20.145 |
SRR8749032 | Uninduced | 14.373 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 3.479 |
SRR8400027 | Control-Root | 2.882 |