Gene detail information of Glyur000019s00002093.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33030.10sulfoquinovosyldiacylglycerol 1
NRXP_003625059.10UDP-sulfoquinovose synthase [Medicago truncatula]
COGYP_007093680.10UDP-sulfoquinovose synthase [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q84KI6|SQD1_SPIOL0UDP-sulfoquinovose synthase, chloroplastic (Precursor)
trEMBLtr|G7KRQ8|G7KRQ8_MEDTR0UDP-sulfoquinovose synthase {ECO:0000313|EMBL:AES81277.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000196637070042+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06118SQD1, sqdB EC:3.13.1.1 Amino sugar and nucleotide sugar metabolism map00520
Glycerolipid metabolismmap00561


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0050662  coenzyme binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000019s00002093.1PF01370.16Epimerase873694.30E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.027
SRR1783600control32.259
SRR1783602moderate drought stress42.856
SRR1811619moderate drought stress42.676

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.407
DRR006520Root Summer glycyrrhizin high producing strain34.075
DRR006521Root Winter glycyrrhizin high producing strain5.795
DRR006522Root Winter glycyrrhizin high producing strain5.509
DRR006523Root Summer glycyrrhizin low producing strain43.305
DRR006524Root Summer glycyrrhizin low producing strain43.508
DRR006525Leaf Summer glycyrrhizin high producing strain31.594
DRR006526Leaf Summer glycyrrhizin high producing strain31.617

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.172
SRR2868004Drought Stress(Tissue:root)29.774
SRR2967015Control (Tissue:root)34.420

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.796
SRR9715740Leave48.333
SRR9715741Leave34.918
SRR9715739Root34.059
SRR9715742Root27.284
SRR9715743Root28.268

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.296
SRR8749028MeJA induced 9h9.812
SRR8749029MeJA induced 9h7.676
SRR8749030Uninduced3.159
SRR8749031Uninduced1.765
SRR8749032Uninduced2.643

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.883
SRR8400027Control-Root79.096

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved