Gene detail information of Glyur000019s00002111.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57270.1 | 4.00E-107 | beta-1,3-glucanase 1 |
| NR | XP_003554152.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase-like [Glycine max] |
| Swissprot | tr|Q03773|E13A_SOYBN | 0 | Glucan endo-1,3-beta-glucosidase (Precursor) |
| trEMBL | tr|I1N8W6|I1N8W6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 167255 | 171076 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002111.1 | PF00332.13 | Glyco_hydro_17 | 33 | 323 | 3.10E-117 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.768 |
| SRR1783600 | control | 26.018 |
| SRR1783602 | moderate drought stress | 15.984 |
| SRR1811619 | moderate drought stress | 15.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.733 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.564 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.690 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.673 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.476 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 234.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 232.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.710 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.996 |
| SRR2967015 | Control (Tissue:root) | 2.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1308.731 |
| SRR9715740 | Leave | 583.195 |
| SRR9715741 | Leave | 1382.958 |
| SRR9715739 | Root | 17.830 |
| SRR9715742 | Root | 19.859 |
| SRR9715743 | Root | 20.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.602 |
| SRR8749028 | MeJA induced 9h | 2.827 |
| SRR8749029 | MeJA induced 9h | 2.550 |
| SRR8749030 | Uninduced | 1.864 |
| SRR8749031 | Uninduced | 1.243 |
| SRR8749032 | Uninduced | 1.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.784 |
| SRR8400027 | Control-Root | 55.648 |