Gene detail information of Glyur000019s00002122.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20990.1 | 6.00E-80 | alpha carbonic anhydrase 4 |
| NR | CAM59682.1 | 7.08E-136 | a-type carbonic anhydrase [Lotus japonicus] |
| COG | YP_003610599.1 | 1.00E-47 | carbonic anhydrase [Enterobacter cloacae subsp. cloacae ATCC 13047] |
| Swissprot | tr|F4JIK2|ATCA4_ARATH | 2.00E-101 | Alpha carbonic anhydrase 4 (Precursor) |
| trEMBL | tr|A7DX12|A7DX12_LOTJA | 3.00E-136 | A-type carbonic anhydrase {ECO:0000313|EMBL:CAM59682.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 238857 | 242341 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01674 | cah | EC:4.2.1.1 | Nitrogen metabolism | map00910 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002122.1 | PF00194.16 | Carb_anhydrase | 47 | 268 | 1.80E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.110 |
| SRR1783600 | control | 0.112 |
| SRR1783602 | moderate drought stress | 0.476 |
| SRR1811619 | moderate drought stress | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.512 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.358 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.281 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.809 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.002 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.097 |