Gene detail information of Glyur000019s00002123.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57300.10INO80 ortholog
NRXP_003554159.10PREDICTED: DNA helicase INO80-like isoform 1 [Glycine max]
COGYP_005070733.16.00E-54SNF2 helicase homolog [Arthrospira platensis NIES-39]
Swissprottr|Q8RXS6|INO80_ARATH0DNA helicase INO80
trEMBLtr|I1N8X6|I1N8X6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G31720.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00019244239254028+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0016817  hydrolase activity, acting on acid anhydrides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000019s00002123.1PF13892.1DBINO3494852.90E-47
Glyur000019s00002123.1PF00176.18SNF2_N5998981.80E-70
Glyur000019s00002123.1PF00271.26Helicase_C124513239.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.887
SRR1783600control15.995
SRR1783602moderate drought stress23.134
SRR1811619moderate drought stress22.950

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.287
DRR006520Root Summer glycyrrhizin high producing strain17.821
DRR006521Root Winter glycyrrhizin high producing strain9.924
DRR006522Root Winter glycyrrhizin high producing strain9.735
DRR006523Root Summer glycyrrhizin low producing strain23.415
DRR006524Root Summer glycyrrhizin low producing strain23.086
DRR006525Leaf Summer glycyrrhizin high producing strain9.033
DRR006526Leaf Summer glycyrrhizin high producing strain8.983

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.890
SRR2868004Drought Stress(Tissue:root)39.441
SRR2967015Control (Tissue:root)37.846

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.573
SRR9715740Leave17.239
SRR9715741Leave20.710
SRR9715739Root3.998
SRR9715742Root23.770
SRR9715743Root18.565

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.715
SRR8749028MeJA induced 9h24.842
SRR8749029MeJA induced 9h14.073
SRR8749030Uninduced8.197
SRR8749031Uninduced11.301
SRR8749032Uninduced10.121

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.036
SRR8400027Control-Root28.838

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved