Gene detail information of Glyur000019s00002124.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41540.306-phosphogluconate dehydrogenase family protein
NRKHN07341.10Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1 [Glycine soja]
COGYP_004583870.12.00E-13glycerol-3-phosphate dehydrogenase (NAD(P)+) [Frankia symbiont of Datisca glomerata]
Swissprottr|Q8S0G4|GPDH1_ORYSJ0Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBLtr|I1N8X8|I1N8X8_SOYBN0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00019258937263116+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00006GPD1 EC:1.1.1.8 Glycerophospholipid metabolism map00564
MAPK signaling pathway - yeastmap04011


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006072  glycerol-3-phosphate metabolic process

GO:0046168  glycerol-3-phosphate catabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0009331  glycerol-3-phosphate dehydrogenase complex


molecular_function

GO:0004367  glycerol-3-phosphate dehydrogenase [NAD+] activity

GO:0016491  oxidoreductase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000019s00002124.1PF01210.18NAD_Gly3P_dh_N1442451.60E-10
Glyur000019s00002124.1PF07479.9NAD_Gly3P_dh_C2724306.10E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.205
SRR1783600control6.831
SRR1783602moderate drought stress6.051
SRR1811619moderate drought stress6.175

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.650
DRR006520Root Summer glycyrrhizin high producing strain3.404
DRR006521Root Winter glycyrrhizin high producing strain5.207
DRR006522Root Winter glycyrrhizin high producing strain5.249
DRR006523Root Summer glycyrrhizin low producing strain4.937
DRR006524Root Summer glycyrrhizin low producing strain4.881
DRR006525Leaf Summer glycyrrhizin high producing strain4.932
DRR006526Leaf Summer glycyrrhizin high producing strain4.674

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.504
SRR2868004Drought Stress(Tissue:root)16.288
SRR2967015Control (Tissue:root)16.870

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.222
SRR9715740Leave1.889
SRR9715741Leave3.409
SRR9715739Root6.377
SRR9715742Root4.370
SRR9715743Root4.086

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.125
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.079
SRR8749031Uninduced0.483
SRR8749032Uninduced0.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.636
SRR8400027Control-Root34.279

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved