Gene detail information of Glyur000019s00002150.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57000.1 | 3.00E-64 | nucleolar essential protein-related |
| NR | KEH28098.1 | 1.52E-99 | EMG1/NEP1 methyltransferase [Medicago truncatula] |
| COG | YP_003483286.1 | 7.00E-09 | Suppressor Mra1 family protein [Aciduliprofundum boonei T469] |
| trEMBL | tr|A0A072UG33|A0A072UG33_MEDTR | 6.00E-100 | EMG1/NEP1 methyltransferase {ECO:0000313|EMBL:KEH28098.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 389584 | 394221 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14568 | EMG1, NEP1 | EC:2.1.1.260 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002150.1 | PF03587.9 | EMG1 | 169 | 365 | 3.60E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.977 |
| SRR1783600 | control | 3.447 |
| SRR1783602 | moderate drought stress | 3.779 |
| SRR1811619 | moderate drought stress | 3.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.754 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.001 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.400 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.462 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.616 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.361 |
| SRR2967015 | Control (Tissue:root) | 7.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.195 |
| SRR9715740 | Leave | 5.839 |
| SRR9715741 | Leave | 6.833 |
| SRR9715739 | Root | 6.249 |
| SRR9715742 | Root | 10.436 |
| SRR9715743 | Root | 8.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.854 |
| SRR8749028 | MeJA induced 9h | 7.331 |
| SRR8749029 | MeJA induced 9h | 8.837 |
| SRR8749030 | Uninduced | 1.254 |
| SRR8749031 | Uninduced | 1.588 |
| SRR8749032 | Uninduced | 1.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.538 |
| SRR8400027 | Control-Root | 11.147 |