Gene detail information of Glyur000019s00002152.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41690.11.00E-50heat shock transcription factor B3
NRXP_003521171.12.02E-120PREDICTED: heat stress transcription factor B-3-like [Glycine max]
Swissprottr|O22230|HSFB3_ARATH5.00E-71Heat stress transcription factor B-3
trEMBLtr|I1JNB9|I1JNB9_SOYBN8.00E-121Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29190.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00019403302405590+


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000019s00002152.1PF00447.12HSF_DNA-bind321231.20E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.913
SRR1783600control27.714
SRR1783602moderate drought stress32.119
SRR1811619moderate drought stress28.240

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.630
DRR006520Root Summer glycyrrhizin high producing strain5.440
DRR006521Root Winter glycyrrhizin high producing strain11.786
DRR006522Root Winter glycyrrhizin high producing strain11.788
DRR006523Root Summer glycyrrhizin low producing strain26.597
DRR006524Root Summer glycyrrhizin low producing strain29.399
DRR006525Leaf Summer glycyrrhizin high producing strain1.531
DRR006526Leaf Summer glycyrrhizin high producing strain1.597

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.209
SRR2868004Drought Stress(Tissue:root)85.273
SRR2967015Control (Tissue:root)81.589

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.918
SRR9715740Leave6.455
SRR9715741Leave11.085
SRR9715739Root2.192
SRR9715742Root4.650
SRR9715743Root4.145

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h148.133
SRR8749028MeJA induced 9h203.249
SRR8749029MeJA induced 9h318.255
SRR8749030Uninduced298.407
SRR8749031Uninduced431.285
SRR8749032Uninduced541.132

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root50.320
SRR8400027Control-Root35.422

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved