Gene detail information of Glyur000019s00002169.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52520.1 | 3.00E-10 | FAR1-related sequence 6 |
| NR | KHN07370.1 | 1.19E-54 | hypothetical protein glysoja_012668 [Glycine soja] |
| Swissprot | tr|Q9SSQ4|FRS6_ARATH | 5.00E-11 | Protein FAR1-RELATED SEQUENCE 6 |
| trEMBL | tr|K7MYC0|K7MYC0_SOYBN | 5.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32051.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00019 | 503892 | 505925 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000019s00002169.1 | PF03101.10 | FAR1 | 61 | 150 | 3.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.657 |
| SRR1783600 | control | 6.782 |
| SRR1783602 | moderate drought stress | 6.259 |
| SRR1811619 | moderate drought stress | 6.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.971 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.377 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.567 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.404 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.048 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.803 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.485 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.972 |
| SRR2967015 | Control (Tissue:root) | 13.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.293 |
| SRR9715740 | Leave | 4.423 |
| SRR9715741 | Leave | 2.346 |
| SRR9715739 | Root | 0.713 |
| SRR9715742 | Root | 4.807 |
| SRR9715743 | Root | 4.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.192 |
| SRR8749028 | MeJA induced 9h | 3.580 |
| SRR8749029 | MeJA induced 9h | 2.388 |
| SRR8749030 | Uninduced | 2.129 |
| SRR8749031 | Uninduced | 0.768 |
| SRR8749032 | Uninduced | 1.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.218 |
| SRR8400027 | Control-Root | 11.801 |