Gene detail information of Glyur000019s00002186.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G57520.10seed imbibition 2
NRXP_007162234.10hypothetical protein PHAVU_001G135200g [Phaseolus vulgaris]
COGYP_004464004.15.00E-69raffinose synthase [Mahella australiensis 50-1 BON]
Swissprottr|Q94A08|RFS2_ARATH0Probable galactinol--sucrose galactosyltransferase 2
trEMBLtr|V7CXY9|V7CXY9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34228.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00019582889589420-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH36


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06617E2.4.1.82 EC:2.4.1.82 Galactose metabolism map00052


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000019s00002186.1PF05691.7Raffinose_syn77530


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.087
SRR1783600control57.119
SRR1783602moderate drought stress126.357
SRR1811619moderate drought stress125.473

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain458.909
DRR006520Root Summer glycyrrhizin high producing strain453.792
DRR006521Root Winter glycyrrhizin high producing strain634.878
DRR006522Root Winter glycyrrhizin high producing strain618.116
DRR006523Root Summer glycyrrhizin low producing strain261.093
DRR006524Root Summer glycyrrhizin low producing strain261.060
DRR006525Leaf Summer glycyrrhizin high producing strain6.001
DRR006526Leaf Summer glycyrrhizin high producing strain6.049

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)225.541
SRR2868004Drought Stress(Tissue:root)304.629
SRR2967015Control (Tissue:root)214.119

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.615
SRR9715740Leave18.890
SRR9715741Leave60.540
SRR9715739Root111.317
SRR9715742Root86.051
SRR9715743Root91.957

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h636.567
SRR8749028MeJA induced 9h972.819
SRR8749029MeJA induced 9h602.228
SRR8749030Uninduced2065.983
SRR8749031Uninduced1397.394
SRR8749032Uninduced2280.913

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root196.159
SRR8400027Control-Root116.477

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved