Gene detail information of Glyur000020s00001744.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06100.3 | 4.00E-69 | myb domain protein 33 |
| NR | XP_006605627.1 | 0 | PREDICTED: transcription factor GAMYB-like isoform X1 [Glycine max] |
| Swissprot | tr|Q0JIC2|GAM1_ORYSJ | 6.00E-82 | Transcription factor GAMYB |
| trEMBL | tr|K7N1M2|K7N1M2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G11040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 74318 | 78135 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001744.1 | PF00249.26 | Myb_DNA-binding | 67 | 114 | 3.50E-15 |
| Glyur000020s00001744.1 | PF00249.26 | Myb_DNA-binding | 124 | 163 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.860 |
| SRR1783600 | control | 4.822 |
| SRR1783602 | moderate drought stress | 8.021 |
| SRR1811619 | moderate drought stress | 8.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.694 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.702 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.414 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.492 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.773 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.572 |
| SRR2967015 | Control (Tissue:root) | 9.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.165 |
| SRR9715740 | Leave | 2.561 |
| SRR9715741 | Leave | 2.922 |
| SRR9715739 | Root | 0.495 |
| SRR9715742 | Root | 0.741 |
| SRR9715743 | Root | 0.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.441 |
| SRR8749028 | MeJA induced 9h | 9.254 |
| SRR8749029 | MeJA induced 9h | 4.354 |
| SRR8749030 | Uninduced | 4.016 |
| SRR8749031 | Uninduced | 1.328 |
| SRR8749032 | Uninduced | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.485 |
| SRR8400027 | Control-Root | 5.715 |