Gene detail information of Glyur000020s00001752.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26930.13.00E-1374-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase
NRAFK46195.10unknown [Lotus japonicus]
COGYP_008588.17.00E-72isopentenyl monophosphate kinase (IPK) [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|P93841|ISPE_SOLLC04-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Precursor; Fragment)
trEMBLtr|I3T103|I3T103_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK46195.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00020123387127362+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00919ispE EC:2.7.1.148 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0016114  terpenoid biosynthetic process


molecular_function

GO:0005524  ATP binding

GO:0050515  4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000020s00001752.1PF00288.21GHMP_kinases_N1732191.40E-07
Glyur000020s00001752.1PF08544.8GHMP_kinases_C2983557.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.477
SRR1783600control32.762
SRR1783602moderate drought stress25.619
SRR1811619moderate drought stress25.218

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.710
DRR006520Root Summer glycyrrhizin high producing strain19.702
DRR006521Root Winter glycyrrhizin high producing strain7.983
DRR006522Root Winter glycyrrhizin high producing strain7.801
DRR006523Root Summer glycyrrhizin low producing strain21.383
DRR006524Root Summer glycyrrhizin low producing strain20.936
DRR006525Leaf Summer glycyrrhizin high producing strain21.437
DRR006526Leaf Summer glycyrrhizin high producing strain21.245

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.781
SRR2868004Drought Stress(Tissue:root)64.920
SRR2967015Control (Tissue:root)50.235

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.740
SRR9715740Leave45.547
SRR9715741Leave50.062
SRR9715739Root9.497
SRR9715742Root22.449
SRR9715743Root16.375

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.399
SRR8749028MeJA induced 9h15.892
SRR8749029MeJA induced 9h13.054
SRR8749030Uninduced30.410
SRR8749031Uninduced19.526
SRR8749032Uninduced13.243

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.973
SRR8400027Control-Root55.430

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved