Gene detail information of Glyur000020s00001764.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G51270.12.00E-150protein serine/threonine kinases;ATP binding;catalytics
NRXP_003553023.10PREDICTED: serine/threonine-protein kinase rio2-like isoform 1 [Glycine max]
COGYP_008432369.11.00E-55hypothetical protein N186_05055 [Thermofilum sp. 1910b]
trEMBLtr|I1MZH4|I1MZH4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04910.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00020202269207701+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07179RIOK2 EC:2.7.11.1 Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0003824  catalytic activity

GO:0004672  protein kinase activity

GO:0004674  protein serine/threonine kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000020s00001764.3PF09202.6Rio2_N8485.40E-14
Glyur000020s00001764.3PF09202.6Rio2_N681134.10E-13
Glyur000020s00001764.3PF01163.17RIO11303021.60E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.772
SRR1783600control8.678
SRR1783602moderate drought stress9.479
SRR1811619moderate drought stress9.354

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.456
DRR006520Root Summer glycyrrhizin high producing strain25.720
DRR006521Root Winter glycyrrhizin high producing strain31.433
DRR006522Root Winter glycyrrhizin high producing strain30.225
DRR006523Root Summer glycyrrhizin low producing strain21.673
DRR006524Root Summer glycyrrhizin low producing strain22.116
DRR006525Leaf Summer glycyrrhizin high producing strain3.557
DRR006526Leaf Summer glycyrrhizin high producing strain3.661

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.763
SRR2868004Drought Stress(Tissue:root)13.714
SRR2967015Control (Tissue:root)15.621

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.389
SRR9715740Leave7.505
SRR9715741Leave5.060
SRR9715739Root1.488
SRR9715742Root9.242
SRR9715743Root7.906

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.982
SRR8749028MeJA induced 9h22.434
SRR8749029MeJA induced 9h20.235
SRR8749030Uninduced20.846
SRR8749031Uninduced10.601
SRR8749032Uninduced6.587

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.706
SRR8400027Control-Root16.990

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved