Gene detail information of Glyur000020s00001772.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01270.1 | 8.00E-122 | Pectate lyase family protein |
| NR | XP_004508770.1 | 0 | PREDICTED: probable pectate lyase P59-like [Cicer arietinum] |
| COG | YP_003976318.1 | 6.00E-16 | pectate lyase family protein [Achromobacter xylosoxidans A8] |
| Swissprot | tr|P15722|PLY59_SOLLC | 8.00E-178 | Probable pectate lyase P59 (Precursor) |
| trEMBL | tr|G7JPX7|G7JPX7_MEDTR | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 232096 | 234471 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01728 | pel | EC:4.2.2.2 | Pentose and glucuronate interconversions | map00040 |
| Quorum sensing | map02024 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001772.1 | PF04431.8 | Pec_lyase_N | 27 | 69 | 6.40E-13 |
| Glyur000020s00001772.1 | PF00544.14 | Pec_lyase_C | 159 | 253 | 1.00E-13 |
| Glyur000020s00001772.1 | PF00544.14 | Pec_lyase_C | 254 | 326 | 1.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.075 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.037 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.004 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.052 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.026 |
| SRR8400027 | Control-Root | 0.117 |