Gene detail information of Glyur000020s00001776.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02760.14.00E-86ubiquiting-conjugating enzyme 2
NRKEH19791.11.53E-109ubiquitin-conjugating enzyme [Medicago truncatula]
COGYP_008797956.11.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P42745|UBC2_ARATH7.00E-110Ubiquitin-conjugating enzyme E2 2
trEMBLtr|A0A072TRF9|A0A072TRF9_MEDTR6.00E-110Ubiquitin-conjugating enzyme {ECO:0000313|EMBL:KEH19791.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00020250155253465+


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10573UBE2A, UBC2, RAD6A EC:2.3.2.23 Ubiquitin mediated proteolysis map04120


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000020s00001776.2PF00179.21UQ_con81443.40E-52


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control284.441
SRR1783600control285.527
SRR1783602moderate drought stress391.886
SRR1811619moderate drought stress391.341

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain214.746
DRR006520Root Summer glycyrrhizin high producing strain211.352
DRR006521Root Winter glycyrrhizin high producing strain331.126
DRR006522Root Winter glycyrrhizin high producing strain314.337
DRR006523Root Summer glycyrrhizin low producing strain498.081
DRR006524Root Summer glycyrrhizin low producing strain497.467
DRR006525Leaf Summer glycyrrhizin high producing strain30.100
DRR006526Leaf Summer glycyrrhizin high producing strain30.665

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)115.096
SRR2868004Drought Stress(Tissue:root)138.872
SRR2967015Control (Tissue:root)143.704

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave58.481
SRR9715740Leave78.662
SRR9715741Leave84.975
SRR9715739Root205.242
SRR9715742Root278.916
SRR9715743Root273.283

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h113.523
SRR8749028MeJA induced 9h104.653
SRR8749029MeJA induced 9h101.687
SRR8749030Uninduced84.001
SRR8749031Uninduced79.825
SRR8749032Uninduced89.870

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root184.854
SRR8400027Control-Root218.200

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved