Gene detail

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Gene detail information of Glyur000020s00001807.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62480.1	8.00E-57	glutathione S-transferase tau 9
NR	CBI15230.3	1.82E-140	unnamed protein product [Vitis vinifera]
COG	YP_007067680.1	1.00E-17	glutathione S-transferase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q9FUT0\|GSTU9_ARATH	1.00E-67	Glutathione S-transferase U9
trEMBL	tr\|Q9FQE6\|Q9FQE6_SOYBN	7.00E-98	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G20730.1}

Sequence

Transcript Sequence

>Glyur000020s00001807.1
ATGGCAGAGCAAGACAAGGTGATCCTACATGGAAAGTGGGCTAGCCCTTTTGTGAGTAGGGTGGAATTGGCCCTTAAACTCAAGGGTATACCCTACGAGTATGTGGAAGAAGATTTAGCAAACAAGAGTGATTTGCTCCTCAAGTACAATCCCGTCTACAAGAAAGTTCCTATACTTGTCCATAATGGAAAGGCCATTGCTGAGTCAATGGTGATCCTTGAGTATATTGATGAAACCTGGAAGGATGGTCCTAAATTGATGCCTGATGATCCCTATAAAAGAGCCCAAGCACGGTTCTGGTGTAAATTCATCGAGGAAAAGCTTTGTAATGGTACACAATCATGCATATATGTTGCAAAAGATAAAACCTATGGAGAAGCTAAACAAAAGACAATCAGCGAAGTGCATGAGAAACTGAGTCTACTTGAGGATGGGATGAAGAATCTTTTCGCAGAAGGGAATCCAAGTGCTGACAAAAACAACTCCGGGCTTCTAGATATTGTGTTTGCTACATTATTTGGCCCTTACAAGGCTGAGGAAGAAGTTCTTGATATGGAGTTCATAGTGCCAGAGAAGTTTCCTGTCTTATTTTCTTGGCTGATGGCTCTTATTGACATCAAAGTGTACCAGAAGTGTAGAGCGATGGCAGAGCAAAGCAAGGTGATCCTACACGGGATGTGGGCTAGCCCTTATGTCAAGAGGNTGGAACTGGCACTTGGACTCAAGGGCATACCTTACGATACAACCCTGTTCACAAGAAGCGTCCCTGTGCTTGTTCATAATGGGAAGGCCATAGCTGAATCCCTTGTGATCCTTGAGTATATCGACGAAACCTGGAAAGTTGGTCCCAAACTGCTTCCTGAGGATCCCTTCAAGAGAGCCCAAGTGCGCTTCTGGTCCAAATTCATCCACGAACAGCTATTTGAGACCACGTTTCTAGTATTCAAAACTGAAGGAGAAGCGCAACAAAAGGCCGTTGAAGAAGTGTATGAGAAACTGAATCTGCTTGAAAATGGAATGAAGACCCTTTTTGCAGACAGCAATCCTGGTGTTGATGAAAACGATGCTGGATTCCTAGACGTTGTCTTTTGTTCGGTGTTTGGCGCTTACAAAGGAAGAAGTTATTGGTATAAACTTCATAGTGCCGGAGAAGTTTCCTGTGTTATTTTCTTGGCTGATGACACTTGTGGAGCTCCAAGCTGTGAAAAAGGCAACTCCTCCACATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	384308	388388	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001807.1	PF13417.1	GST_N_3	9	81	1.80E-18
Glyur000020s00001807.1	PF13409.1	GST_N_2	228	277	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.600
SRR1783600	control	0.508
SRR1783602	moderate drought stress	0.523
SRR1811619	moderate drought stress	0.499

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.272
DRR006520	Root Summer glycyrrhizin high producing strain	0.238
DRR006521	Root Winter glycyrrhizin high producing strain	0.090
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.109
DRR006524	Root Summer glycyrrhizin low producing strain	2.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	11.731
SRR2868004	Drought Stress(Tissue:root)	18.908
SRR2967015	Control (Tissue:root)	19.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.255
SRR9715740	Leave	0.494
SRR9715741	Leave	0.438
SRR9715739	Root	0.272
SRR9715742	Root	1.904
SRR9715743	Root	2.110

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.353
SRR8749028	MeJA induced 9h	18.787
SRR8749029	MeJA induced 9h	5.540
SRR8749030	Uninduced	0.640
SRR8749031	Uninduced	0.402
SRR8749032	Uninduced	0.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.556
SRR8400027	Control-Root	5.341