Gene detail information of Glyur000020s00001812.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74680.1 | 7.00E-160 | Exostosin family protein |
| NR | KEH33466.1 | 0 | secondary cell wall glycosyltransferase family 47 protein [Medicago truncatula] |
| Swissprot | tr|Q6DBG8|ARAD1_ARATH | 1.00E-77 | Probable arabinosyltransferase ARAD1 |
| trEMBL | tr|A0A072UVN7|A0A072UVN7_MEDTR | 0 | Secondary cell wall glycosyltransferase family 47 protein {ECO:0000313|EMBL:KEH33466.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 430748 | 433755 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001812.1 | PF03016.10 | Exostosin | 113 | 430 | 2.30E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.075 |
| SRR1783600 | control | 11.179 |
| SRR1783602 | moderate drought stress | 10.015 |
| SRR1811619 | moderate drought stress | 9.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.088 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.599 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.518 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.319 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.834 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.903 |
| SRR2967015 | Control (Tissue:root) | 13.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.814 |
| SRR9715740 | Leave | 3.468 |
| SRR9715741 | Leave | 3.042 |
| SRR9715739 | Root | 3.936 |
| SRR9715742 | Root | 7.151 |
| SRR9715743 | Root | 6.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.972 |
| SRR8749028 | MeJA induced 9h | 8.167 |
| SRR8749029 | MeJA induced 9h | 2.819 |
| SRR8749030 | Uninduced | 2.022 |
| SRR8749031 | Uninduced | 1.005 |
| SRR8749032 | Uninduced | 0.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.877 |
| SRR8400027 | Control-Root | 11.131 |