Gene detail information of Glyur000020s00001819.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47500.1 | 3.00E-93 | cycling DOF factor 3 |
| NR | XP_004514828.1 | 0 | PREDICTED: cyclic dof factor 3-like [Cicer arietinum] |
| Swissprot | tr|Q8LFV3|CDF3_ARATH | 7.00E-117 | Cyclic dof factor 3 |
| trEMBL | tr|K7KKN2|K7KKN2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G33410.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 465447 | 469150 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001819.1 | PF02701.10 | zf-Dof | 141 | 201 | 1.30E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.104 |
| SRR1783600 | control | 13.186 |
| SRR1783602 | moderate drought stress | 36.162 |
| SRR1811619 | moderate drought stress | 36.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.927 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.980 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.303 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.424 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.601 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.900 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.287 |
| SRR2967015 | Control (Tissue:root) | 24.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.268 |
| SRR9715740 | Leave | 25.878 |
| SRR9715741 | Leave | 24.069 |
| SRR9715739 | Root | 8.723 |
| SRR9715742 | Root | 18.953 |
| SRR9715743 | Root | 18.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.892 |
| SRR8749028 | MeJA induced 9h | 29.716 |
| SRR8749029 | MeJA induced 9h | 8.030 |
| SRR8749030 | Uninduced | 3.368 |
| SRR8749031 | Uninduced | 3.239 |
| SRR8749032 | Uninduced | 5.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 36.786 |
| SRR8400027 | Control-Root | 23.534 |