Gene detail information of Glyur000020s00001838.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07720.1 | 0 | Galactosyl transferase GMA12/MNN10 family protein |
| NR | XP_004500012.1 | 0 | PREDICTED: putative glycosyltransferase 5-like [Cicer arietinum] |
| Swissprot | tr|Q9LF80|GT3_ARATH | 0 | Putative glycosyltransferase 3 |
| trEMBL | tr|A0A072UV09|A0A072UV09_MEDTR | 0 | Xyloglucan xylosyltransferase {ECO:0000313|EMBL:KEH33442.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 566442 | 569250 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT34 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001838.1 | PF05637.7 | Glyco_transf_34 | 145 | 383 | 1.00E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.671 |
| SRR1783600 | control | 28.201 |
| SRR1783602 | moderate drought stress | 26.304 |
| SRR1811619 | moderate drought stress | 25.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.407 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.383 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.565 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.573 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.419 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.902 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.141 |
| SRR2967015 | Control (Tissue:root) | 23.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.191 |
| SRR9715740 | Leave | 8.670 |
| SRR9715741 | Leave | 6.683 |
| SRR9715739 | Root | 17.563 |
| SRR9715742 | Root | 22.559 |
| SRR9715743 | Root | 19.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.602 |
| SRR8749028 | MeJA induced 9h | 7.199 |
| SRR8749029 | MeJA induced 9h | 2.564 |
| SRR8749030 | Uninduced | 3.829 |
| SRR8749031 | Uninduced | 1.777 |
| SRR8749032 | Uninduced | 1.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.789 |
| SRR8400027 | Control-Root | 33.922 |