Gene detail information of Glyur000020s00001842.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G18660.32.00E-175zinc finger (C3HC4-type RING finger) family protein
NRKEH33436.10zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
COGYP_007071548.14.00E-22peptidase S16 lon domain-containing protein [Leptolyngbya sp. PCC 7376]
Swissprottr|Q9SYU4|PEX10_ARATH3.00E-07Peroxisome biogenesis factor 10
trEMBLtr|A0A072UVL6|A0A072UVL6_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH33436.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00020586570593510+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004176  ATP-dependent peptidase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000020s00001842.1PF13414.1TPR_1139842.00E-06
Glyur000020s00001842.1PF13923.1zf-C3HC4_21972341.20E-08
Glyur000020s00001842.1PF02190.11LON2814779.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.689
SRR1783600control3.744
SRR1783602moderate drought stress3.032
SRR1811619moderate drought stress3.046

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.865
DRR006520Root Summer glycyrrhizin high producing strain4.602
DRR006521Root Winter glycyrrhizin high producing strain4.221
DRR006522Root Winter glycyrrhizin high producing strain4.255
DRR006523Root Summer glycyrrhizin low producing strain6.844
DRR006524Root Summer glycyrrhizin low producing strain6.554
DRR006525Leaf Summer glycyrrhizin high producing strain18.146
DRR006526Leaf Summer glycyrrhizin high producing strain18.096

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.118
SRR2868004Drought Stress(Tissue:root)11.344
SRR2967015Control (Tissue:root)7.438

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.601
SRR9715740Leave48.796
SRR9715741Leave21.605
SRR9715739Root1.455
SRR9715742Root4.971
SRR9715743Root4.539

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.007
SRR8749028MeJA induced 9h11.249
SRR8749029MeJA induced 9h7.354
SRR8749030Uninduced11.597
SRR8749031Uninduced4.066
SRR8749032Uninduced4.135

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.914
SRR8400027Control-Root9.082

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved