Gene detail information of Glyur000021s00002691.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G21350.14.00E-75RNA polymerase transcriptional regulation mediator-related
NRXP_003531638.13.35E-147PREDICTED: mediator of RNA polymerase II transcription subunit 6-like isoform X1 [Glycine max]
Swissprottr|F4IXJ7|MED6_ARATH8.00E-95Mediator of RNA polymerase II transcription subunit 6
trEMBLtr|U5U2M8|U5U2M8_PHAVU1.00E-146Mediator of RNA polymerase II transcription subunit 6 {ECO:0000313|EMBL:AGZ15418.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000217145974510-


Gene family

Gene familysubfamily
Transcription Factors FamilyMED6


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006357  regulation of transcription from RNA polymerase II promoter


cellular_component

GO:0016592  mediator complex


molecular_function

GO:0001104  RNA polymerase II transcription cofactor activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000021s00002691.1PF04934.9Med6231485.40E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.024
SRR1783600control21.129
SRR1783602moderate drought stress38.867
SRR1811619moderate drought stress37.851

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.613
DRR006520Root Summer glycyrrhizin high producing strain26.272
DRR006521Root Winter glycyrrhizin high producing strain57.739
DRR006522Root Winter glycyrrhizin high producing strain56.047
DRR006523Root Summer glycyrrhizin low producing strain24.275
DRR006524Root Summer glycyrrhizin low producing strain24.159
DRR006525Leaf Summer glycyrrhizin high producing strain11.050
DRR006526Leaf Summer glycyrrhizin high producing strain10.942

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.509
SRR2868004Drought Stress(Tissue:root)24.894
SRR2967015Control (Tissue:root)30.365

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.518
SRR9715740Leave15.519
SRR9715741Leave12.319
SRR9715739Root10.865
SRR9715742Root13.824
SRR9715743Root12.423

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.732
SRR8749028MeJA induced 9h17.315
SRR8749029MeJA induced 9h15.573
SRR8749030Uninduced10.464
SRR8749031Uninduced5.657
SRR8749032Uninduced8.740

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.879
SRR8400027Control-Root25.454

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved