Gene detail information of Glyur000021s00002713.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51710.1 | 0 | ubiquitin-specific protease 6 |
| NR | XP_004510348.1 | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q949Y0|UBP6_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 6 |
| trEMBL | tr|A0A072TN68|A0A072TN68_MEDTR | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 197425 | 208814 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002713.1 | PF00240.18 | ubiquitin | 16 | 72 | 1.10E-06 |
| Glyur000021s00002713.1 | PF00443.24 | UCH | 103 | 473 | 1.10E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.933 |
| SRR1783600 | control | 40.297 |
| SRR1783602 | moderate drought stress | 36.008 |
| SRR1811619 | moderate drought stress | 36.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 55.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.913 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.151 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.082 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.528 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 92.846 |
| SRR2868004 | Drought Stress(Tissue:root) | 89.747 |
| SRR2967015 | Control (Tissue:root) | 77.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 51.038 |
| SRR9715740 | Leave | 57.554 |
| SRR9715741 | Leave | 60.929 |
| SRR9715739 | Root | 13.461 |
| SRR9715742 | Root | 43.563 |
| SRR9715743 | Root | 37.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 76.897 |
| SRR8749028 | MeJA induced 9h | 77.212 |
| SRR8749029 | MeJA induced 9h | 65.478 |
| SRR8749030 | Uninduced | 50.077 |
| SRR8749031 | Uninduced | 49.769 |
| SRR8749032 | Uninduced | 37.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 69.908 |
| SRR8400027 | Control-Root | 67.320 |