Gene detail information of Glyur000021s00002714.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 5.00E-10 | F-box/RNI-like superfamily protein |
| NR | KHN11307.1 | 0 | Putative FBD-associated F-box protein [Glycine soja] |
| Swissprot | tr|Q9ZV94|FDL11_ARATH | 2.00E-12 | Putative F-box/FBD/LRR-repeat protein At1g78760 |
| trEMBL | tr|K7L7P0|K7L7P0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G20875.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 210612 | 212725 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002714.1 | PF00646.28 | F-box | 5 | 41 | 0.00011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.696 |
| SRR1783600 | control | 8.777 |
| SRR1783602 | moderate drought stress | 11.306 |
| SRR1811619 | moderate drought stress | 11.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.757 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.951 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.213 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.358 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.262 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.872 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.433 |
| SRR2967015 | Control (Tissue:root) | 24.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.230 |
| SRR9715740 | Leave | 23.474 |
| SRR9715741 | Leave | 15.750 |
| SRR9715739 | Root | 11.035 |
| SRR9715742 | Root | 7.396 |
| SRR9715743 | Root | 9.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.117 |
| SRR8749028 | MeJA induced 9h | 8.806 |
| SRR8749029 | MeJA induced 9h | 8.579 |
| SRR8749030 | Uninduced | 11.067 |
| SRR8749031 | Uninduced | 15.263 |
| SRR8749032 | Uninduced | 13.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.237 |
| SRR8400027 | Control-Root | 17.042 |