Gene detail

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Gene detail information of Glyur000021s00002735.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13750.1	0	beta galactosidase 1
NR	XP_003531618.1	0	PREDICTED: beta-galactosidase 1-like [Glycine max]
COG	YP_003380010.1	2.00E-49	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9SCW1\|BGAL1_ARATH	0	Beta-galactosidase 1 (Precursor)
trEMBL	tr\|I1KUU7\|I1KUU7_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000021s00002735.1
AAGAACCTTCACCTTTCACCCCAAATGGTTTAATCCCCTAAAGGGAGAGAAAAAGAAAAAGANAACACACTGTCTCTCACTCTCTGAAGCTTCAAGCTCTCTCATTTTTTTCTTCCTTTCACACTGTTTCTCAAGCTATCTCTTCAATCATTCTGCAAAAAAAGAAAAGAGAACAAAGGAAAGGAGGAAAGTTGAGAGCACAGAACAAAAGCTGGAGAACGCCACAGCTCTCTCTCCTTGCATTTCTCTCTCTTTATACATTGAAGCAGCATAGAATAAAGTGTCTGCTTTACCAAGCAGAGGGAACAGAAAGGGTTTATTACTCATTGCTATCATGGGCTTTAGGTTCATCAAAGTATGTAATGTGCTACTGTTGGTGGTGCTTGCATGCTCATTGATTGGTCATGCTGCAGCCTCAGTGTCCTATGACCATAAGGCTATCACCATCAATGGACAAAGAAGGATACTGCTTTCTGGGTCCATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATCCAAAAGGCTAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGGCACGAACCTTCACCTGGCAAATATTATTTTGAGGGGAACTATGATTTGGTGAAGTTCATAAAGCTGGCGCAGCAAGCAGGCCTCTATGTTCACCTGAGAATTGGTCCTTATGCCTGTGCTGAGTGGAACTTTGGTGGTTTCCCTGTTTGGCTCAAGTACATACCAGGTATCAGCTTCAGAACAGACAATGGACCGTTTAAGTTTCAAATGCAAAAATTTACCAAAAAGATTGTGGATATGATGAAAGCAGAAAGGTTATACGAGTCTCAGGGTGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTCCTGGTAAGGCCTATGCTCAGTGGGCAGCACATATGGCTGTAGGACTTGGTACTGGGGTTCCATGGGTTATGTGCAAGCAAGATGATGCTCCTGATCCTGTTATTAATACTTGCAACGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCGGTTCCTCATAGACCTGCTGAGGACTTGGCGTTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGTATCATGGGGGAACAAATTTTGGTAGAACTGCTGGTGGTCCCTTTATTGCCACAAGCTATGATTATGACGCACCTCTTGATGAATATGGACTTCTCAGGCAACCAAAGTGGGGTCATTTGAAGGATTTACACAGAGCAGTAAAACTCTGTGAACCTGCTTTAGTTTCTGCAGATCCTACCGTGACTCGGCTTGGAAACTATCAAGAGGCTCATGTTTTTAAATCAAGATCTGGAGCTTGTGCTGCATTCCTTGCNAACTATAACCCACAATCTTATGCAACAGTGGCATTTGGGAATCAGCATTACAACTTACCCCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAANACTGCAAGGGTTGGTTCCCAGAGCGCACAGATGAAGATGACCCGTGTTCCTATTCACGGGGGACTCTCTTGGAAAGCATTTAATGAGGAGACAACCACTACTGATGATAGTTCCTTCACTGTGGCTGGCCTATTGGAACAGATAAATACAACCAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTCATCAATCCCAACGAAGCATTTTTGAGGAATGGAAAGTATCCTGTTCTTACAGTATTATCCGCTGGGCATGCTTTGCATGTTTTTATCAATGGTCAGCTATCAGGAACTGTATATGGAAGCTTGAAATTCCCTAAACTAACCTTTAGCGAGAGTGTGAAGCTTAGAGCTGGAGTTAACAAAATCTCCCTTTTGAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCGCATTTTGAAAGATGGAACGCTGGTGTTCTTGGCCCAATTACATTGAATGGTCTCAANGAGGGGAGAAGGGACTTAACATGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAGTCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCTCGGAGGCAGCCATTGACTTGGTACAAAACTACTTTTGACGCCCCGGCTGGAGTTGCACCGTTGGCTGTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAGAGTCTGGGCCGCTACTGGCCTGCTTATAAAGCATCTGGTTCTTGTGGCTATTGCAACTATGCAGGAAGTTATAATGAGAACAAATGTGGAAGTAACTGCGGCGAGGCTTCGCAACGATGGTATCATGTTCCTCATTCATGGCTAAAGCCAACTGGAAATTTATTGGTTGTGTTTGAGGAATTGGGAGGAGATCCAAACGGGATCTTTTTGGTAAGAAGGGATATTGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAATCTTGTTAGTTATCAGATGCAAGCTTCTGGAAAGGTTAGCAGACCTGTGAGTCCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAGATCTCATCAATCAAATTTGCTAGCTTTGGCACTCCGGTAGGGTCTTGCGGGAACTACCGNGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCCTTTCAAAGGAATTGTGTTGGGCAAAGTATGTGCACAGTGACAGTGTCACCTGAAATTTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGCACCTGATCATTTTCAANCTCAGAAAATAAATGGAATAAAGATTCAAGATTTTTTTTCAGCTTTTGGTAATTCAATACAGGGTTTTTGAGTCAACNAAGTCTACTACACTTCTGGATCATCACCACCAGCATTAATTTGGCTTTTACCAAGGTGAAGTTGCAGATGAAACACAACACACCATGTGGTTGAAAAGCCTGTAGAGATTGCTGGGANTGATTGTGGTTATGTTTGTTTGTGTATATACACTGGGGTTCAGCCTGTTATACAGTGGTGAAAAGGAAGGCGAAGAAGTTGCTTGATGCATTGCATGCACATTGAGACGACACCAANTGAGTCCATGTGCAAATTGGTTTTTGTTTTGTGTGGAAGTCTCTTGCTTCCTGTAATAATAATATTATTGTAATATTCCCTTGTAGCTGCATGGAGAGAGCAATTTAGTTACTTCTCTCCTTATAAGAAATTTCCCATTGTAATAAGATATGATCAGGCATATTGAATACAGTTATTATGCTTTGCTTTTAACTCCTNACTCTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	392709	399571	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002735.1	PF01301.14	Glyco_hydro_35	36	340	1.20E-119
Glyur000021s00002735.1	PF02140.13	Gal_Lectin	764	841	1.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.210
SRR1783600	control	54.716
SRR1783602	moderate drought stress	32.975
SRR1811619	moderate drought stress	32.776

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.394
DRR006520	Root Summer glycyrrhizin high producing strain	64.412
DRR006521	Root Winter glycyrrhizin high producing strain	0.519
DRR006522	Root Winter glycyrrhizin high producing strain	0.513
DRR006523	Root Summer glycyrrhizin low producing strain	67.946
DRR006524	Root Summer glycyrrhizin low producing strain	67.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.310
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	165.891
SRR2868004	Drought Stress(Tissue:root)	97.357
SRR2967015	Control (Tissue:root)	157.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	32.498
SRR9715740	Leave	23.727
SRR9715741	Leave	24.434
SRR9715739	Root	25.970
SRR9715742	Root	41.512
SRR9715743	Root	38.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.581
SRR8749028	MeJA induced 9h	8.803
SRR8749029	MeJA induced 9h	1.241
SRR8749030	Uninduced	1.436
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	95.334
SRR8400027	Control-Root	107.543