Gene detail information of Glyur000021s00002755.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55110.1 | 2.00E-94 | indeterminate(ID)-domain 7 |
| NR | XP_003627109.1 | 0 | Zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9LRW7|IDD11_ARATH | 2.00E-134 | Protein indeterminate-domain 11 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|G7LHG9|G7LHG9_MEDTR | 0 | C2H2-like zinc finger protein, putative {ECO:0000313|EMBL:AET01585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 521019 | 523593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002755.1 | PF00096.21 | zf-C2H2 | 81 | 103 | 0.022 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.906 |
| SRR1783600 | control | 0.909 |
| SRR1783602 | moderate drought stress | 1.698 |
| SRR1811619 | moderate drought stress | 1.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.278 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.708 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.707 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.335 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.099 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.018 |
| SRR2967015 | Control (Tissue:root) | 17.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.244 |
| SRR9715740 | Leave | 61.911 |
| SRR9715741 | Leave | 55.377 |
| SRR9715739 | Root | 0.722 |
| SRR9715742 | Root | 4.966 |
| SRR9715743 | Root | 3.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.377 |
| SRR8749028 | MeJA induced 9h | 2.633 |
| SRR8749029 | MeJA induced 9h | 0.068 |
| SRR8749030 | Uninduced | 0.487 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.926 |
| SRR8400027 | Control-Root | 5.741 |