Gene detail information of Glyur000021s00002759.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13790.2 | 0 | Glycosyl hydrolases family 32 protein |
| NR | KEH18387.1 | 0 | cell-wall invertase [Medicago truncatula] |
| COG | YP_003405601.1 | 2.00E-43 | beta-fructofuranosidase [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|Q43089|INV1_PEA | 0 | Beta-fructofuranosidase, cell wall isozyme (Precursor) |
| trEMBL | tr|A0A072TLX8|A0A072TLX8_MEDTR | 0 | Cell-wall invertase {ECO:0000313|EMBL:KEH18387.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 544375 | 548723 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH32 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01193 | INV, sacA | EC:3.2.1.26 | Galactose metabolism | map00052 |
| Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002759.1 | PF00251.15 | Glyco_hydro_32N | 49 | 354 | 1.00E-97 |
| Glyur000021s00002759.1 | PF08244.7 | Glyco_hydro_32C | 425 | 510 | 5.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.586 |
| SRR1783600 | control | 9.574 |
| SRR1783602 | moderate drought stress | 2.927 |
| SRR1811619 | moderate drought stress | 2.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 132.846 |
| SRR2868004 | Drought Stress(Tissue:root) | 91.667 |
| SRR2967015 | Control (Tissue:root) | 80.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.461 |
| SRR9715740 | Leave | 0.246 |
| SRR9715741 | Leave | 0.652 |
| SRR9715739 | Root | 4.745 |
| SRR9715742 | Root | 7.389 |
| SRR9715743 | Root | 5.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 261.046 |
| SRR8749028 | MeJA induced 9h | 3114.559 |
| SRR8749029 | MeJA induced 9h | 464.612 |
| SRR8749030 | Uninduced | 1868.169 |
| SRR8749031 | Uninduced | 710.616 |
| SRR8749032 | Uninduced | 288.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.111 |
| SRR8400027 | Control-Root | 29.300 |