Gene detail

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Gene detail information of Glyur000022s00001999.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28345.1	0	ABC transporter family protein
NR	XP_004505438.1	0	PREDICTED: putative multidrug resistance protein-like [Cicer arietinum]
COG	YP_629357.1	9.00E-109	ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q6YUU5\|MDR_ORYSJ	0	Putative multidrug resistance protein
trEMBL	tr\|K7LUK7\|K7LUK7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G16416.1}

Sequence

Transcript Sequence

>Glyur000022s00001999.1
TTACTGAATCTTTCTAAAAAAAAGGGTCTTGGTGAAATGGGGAACAATAGCTTGTTTCGTTATGCAGATGGAATGGATAAGTTGCTGATGTTCTTTGGGACCCTTGGAAGCCTTGGAGATGGGCTGCAGAACCCTCTCATGATGTACATTCTTAGTGATGTCATCAATGCCTATGGAGACAGGAATAGCCAGTTGACAATGCATGATGTGAACAAGTATGCATCGAGGCTTCTTTGTGTTGCAATTGGAGTTGGACTTTCCGCTTTTGTTGAAGGAATATGTTGGACAAGAACAGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGTTTCTTTGACACACAGACTTCTGGTTCTTCAACAACCTACCAAGTTGTCTCGCTCATCTCCTCCGATGCAAATACAATCCAAGCTGCCTTGTGTGAGAAGATACCTGACTGCCTGACTTACATGTCAACATTCTTGTTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCCATACCACTCTCTGTCATGTTCATTGTTCCGGCGCTTGTATTCGGGAAGATCATGTTNGATGTCACAATGAAAATGATCGAGTCTTATGGGGTTGCTGGTGGGATTGCAGAACAAGCAATTTCTTCAATAAGAACCGTTTATTCTTATGTTGGGGAAAATCAAACAGTGAAAAGATTTAGCAGTGCACTTCAGAAAACTATGGAATTTGGAATAAAGCAAGGTTTTGCAAAGGGGTTGANGTTAGGAAGTATGGGAGTTATTTATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTCTGGTCTCTGAAAAAGGAGAGAAAGGTGGCCATGTGTTTGTAGCTGGCTTCAACATCCTAATGGGAGGGCTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACAGAGGCAAGTGCTGNGGTCACTCGTCTTTTTGAGATGGTTGATCGCGTGCCAACTATCGATTCTGAAGATAAGAAAGGAAAGGCTTTATCACATGTGAGAGGGGAAATTGAATTTAAAGACATCTACTTCTGTTACCCATCTAGGCCAGATTCACCAGTCTTGCAGGGATTCAGTCTCACTATTCCAGCAGGCAAGAGGGTAGGCCTTGTTGGGGGTAGTGGCTCAGGAAAATCCACTGTGATTGCACTGCTTGAAAGGTTTTATGACCCTGTTGAGGGAGAAATACTCTTGGATGGTCACAAGATTAACAAACTTCAATTGAAATGGTTGAGATCTCACCTTGGCCTAGTAAATCAAGAGCCTGTTCTTTTTGCCACATCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAGTGTGATTAGTGCAGCTAAAGCAGCAAATGCACATGATTTCATTGTCAAATTACCGGATGGGTATGAAACTCAAGTTGGGCAGTTTGGTTTTCAATTGTCTGGTGGACAGAAGCAGCGCATTGCCATAGCTAGAGCATTACTTAGGGATCCAAAGGTTCTCCTGCTTGATGAAGCAACCAGTGCACTGGATGCTCAGTCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAGGGAAGGACAACAATCATCATTGCTCACCGCCTGTCTACGATAAGAACAGCCGACACGATTGTAGTGCTTCAAGCAGGGAGAGTGATTGAATCAGGTACTCATAATGAGCTCCTGGAAGTGAATGGAGGACAAGGCGGGGAGTATGCGCGCATGGTTGAGTTGCAGCAATTAACAACTCAGAATGATGAAGCCAAACATTTCTCCAATCTTCAAACAGAAGGAAAGAGCTCCCATAGGATGAGCATTCCCCAAAGTCCAGGAGTGAGTTTCAGATCAAGCACACCAGGCACTCCAATGTTGAATCCCTTCAGCCAGGGATTTTCCATGGGCACACCTTACTCATACTCCATCCAATATGACCTTGATGATGATAGTTTTGATGATAACTTGAAGAGATCAAACTATCCAGCTCCTTCGCAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGGAGAGCAGTGTTGGGAATATTGGGAGCAATAGGCTCAGGAGCAGTACAACCTGTGAATGCATACTGTGTGGGGATACTCATATCAGTTTATTTTTACCCTGATGCCTCTGAGATGAAGTCTAAAGCTAGAACCCTGGCCCTTGTTTTCCTAGGAATTGGTGTTTTTAACTTCTTCACCAGTATTCTCCAACACTATAATTTTGCAGTTATGGGGGAGAGGTTGACTAAAAGAATAAGAGAGAAAATACTAGAGAAGTTGATGACTTTTGAGATTGGATGGTTTGATCATGAGGAGAATACAAGTGCATCCATTTGTGCAAGATTGTCCTCTGAAGCCAACTTGGTTCGTTCCCTTGTCGGGGACCGGATGTCTTTGTTGGCTCAAGCAGTTTTCGGGTCTGTCTTCGCGTACACCGTAGGACTTGTCCTCACATGGAGGCTTTCTCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTCTATTCAAGAAGTGTCTTGATGAAGACTATGGCGGAAAAAACCCGGAAGGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCACAGAACCATAACTGCCTTCAGTTCTCAGAGAAGGATGTTGTCACTCTTCAAATCCACAATGGTGGGACCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAGTTTTTCAACACTGCATCAACAGCATTGGCTTACTGGTATGGTGGGAAGCTCCTCATAGAGGGGATCATAGAACCAAGGCATCTTTTTCAAGCATTCTTAATATTGCTCTTCTCTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACATATCCAAAGGAAGCAGTGCAGTTGGATCAGTTTTTGCTATCCTTGACAGGAAAAGTGAGGTCGATCCTGAAGCCTTATGGGGAGCAGACAAGAAAAGGAAAATAAGGGGCAGAGTGGAGCTTAGGAGTGTGTTCTTTGCTTATCCAACCAGACCTGACCAAATGATATTCCAGGGTCTGAATCTCAAAGTTGAGGCTGGAAGAACAGTAGCACTGGTGGGGCATAGTGGTTGTGGTAAATCCACTATCATTGCTCTGATTGAAAGGTTTTATGATCCTCTCAAGGGAATGGTATGCATAGATGAGCAAGACATCAAGTCCTATAATTTGAGAATCCTGAGGTCACACATTGCATTGGTGAATCAGGAACCAACCCTCTTTAGTGGAACCATTAGAGAAAACATTGCCTATGGGAAAGAAAACGCAACTGAATCTGAGATAAGAAGGGCTGCCACTCTGGCTAATGCTCATGAGTTCATAAGTGGAATGAATGATGGGTATGAGACATACTGTGGAGAAAGAGGGGTTCAGCTATCAGGAGGTCAGAAACAAAGAGTGGCCTTAGCCAGGGCCATACTGAAGAACCCTGCAATCCTTCTTCTGGATGAGGCTACCAGTGCACTTGACAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTTGAGAAGATAATGGTTGGAAGGACATGCATAGCAGTGGCACACAGGCTATCTACAATACAGAAATCAAACTCCATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGCTCACATAATGAATTGATTTCACTTGGACGAAATGGAGCATACTATTCTCTTGTTAAACTTCAAAGTGGCAGCTCCCCTAGGTGA

Protein Sequence

>Glyur000022s00001999.1
LLNLSKKKGLGEMGNNSLFRYADGMDKLLMFFGTLGSLGDGLQNPLMMYILSDVINAYGDRNSQLTMHDVNKYASRLLCVAIGVGLSAFVEGICWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTSGSSTTYQVVSLISSDANTIQAALCEKIPDCLTYMSTFLFCHIFAFVLSWRLALAAIPLSVMFIVPALVFGKIMXDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTVKRFSSALQKTMEFGIKQGFAKGLXLGSMGVIYISWGFQAWVGTFLVSEKGEKGGHVFVAGFNILMGGLSILSALPNLTAITEASAXVTRLFEMVDRVPTIDSEDKKGKALSHVRGEIEFKDIYFCYPSRPDSPVLQGFSLTIPAGKRVGLVGGSGSGKSTVIALLERFYDPVEGEILLDGHKINKLQLKWLRSHLGLVNQEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTADTIVVLQAGRVIESGTHNELLEVNGGQGGEYARMVELQQLTTQNDEAKHFSNLQTEGKSSHRMSIPQSPGVSFRSSTPGTPMLNPFSQGFSMGTPYSYSIQYDLDDDSFDDNLKRSNYPAPSQWRLLKMNAPEWGRAVLGILGAIGSGAVQPVNAYCVGILISVYFYPDASEMKSKARTLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRMSLLAQAVFGSVFAYTVGLVLTWRLSLVMIAVQPLVIGSFYSRSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQRRMLSLFKSTMVGPKKESIRQSWISGFGLFSSQFFNTASTALAYWYGGKLLIEGIIEPRHLFQAFLILLFSAYIIAEAGSMTSDISKGSSAVGSVFAILDRKSEVDPEALWGADKKRKIRGRVELRSVFFAYPTRPDQMIFQGLNLKVEAGRTVALVGHSGCGKSTIIALIERFYDPLKGMVCIDEQDIKSYNLRILRSHIALVNQEPTLFSGTIRENIAYGKENATESEIRRAATLANAHEFISGMNDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIAVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRNGAYYSLVKLQSGSSPR

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	196918	202774	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05658	ABCB1, CD243	EC:3.6.3.44	ABC transporters	map02010
			Bile secretion	map04976
			MicroRNAs in cancer	map05206

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component GO:0016021 integral component of membrane molecular_function GO:0005524 ATP binding GO:0016887 ATPase activity GO:0042626 ATPase activity, coupled to transmembrane movement of substances "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001999.1	PF00664.18	ABC_membrane	31	297	2.70E-36
Glyur000022s00001999.1	PF00005.22	ABC_tran	373	522	9.80E-35
Glyur000022s00001999.1	PF00664.18	ABC_membrane	697	968	9.20E-41
Glyur000022s00001999.1	PF00005.22	ABC_tran	1038	1186	5.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.115
SRR1783600	control	0.115
SRR1783602	moderate drought stress	0.020
SRR1811619	moderate drought stress	0.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.084
DRR006521	Root Winter glycyrrhizin high producing strain	0.029
DRR006522	Root Winter glycyrrhizin high producing strain	0.028
DRR006523	Root Summer glycyrrhizin low producing strain	0.116
DRR006524	Root Summer glycyrrhizin low producing strain	0.116
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.873

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.088
SRR2868004	Drought Stress(Tissue:root)	1.458
SRR2967015	Control (Tissue:root)	0.379

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.224
SRR9715740	Leave	0.136
SRR9715741	Leave	0.137
SRR9715739	Root	0.000
SRR9715742	Root	0.017
SRR9715743	Root	0.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.094
SRR8749028	MeJA induced 9h	0.017
SRR8749029	MeJA induced 9h	0.126
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.040
SRR8749032	Uninduced	0.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.463
SRR8400027	Control-Root	0.503