Gene detail information of Glyur000022s00002009.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54690.1 | 0 | galacturonosyltransferase 12 |
| NR | XP_003543290.1 | 0 | PREDICTED: probable galacturonosyltransferase 12-like [Glycine max] |
| COG | YP_007080337.1 | 6.00E-11 | LPS:glycosyltransferase [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|Q9FH36|GAUTC_ARATH | 0 | Probable galacturonosyltransferase 12 |
| trEMBL | tr|I1M3I1|I1M3I1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 244931 | 248616 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002009.1 | PF01501.15 | Glyco_transf_8 | 211 | 505 | 4.50E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.491 |
| SRR1783600 | control | 0.493 |
| SRR1783602 | moderate drought stress | 0.502 |
| SRR1811619 | moderate drought stress | 0.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.236 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.903 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.094 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.832 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.550 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.148 |
| SRR2967015 | Control (Tissue:root) | 3.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.280 |
| SRR9715740 | Leave | 2.866 |
| SRR9715741 | Leave | 2.245 |
| SRR9715739 | Root | 0.323 |
| SRR9715742 | Root | 2.072 |
| SRR9715743 | Root | 1.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.247 |
| SRR8749028 | MeJA induced 9h | 0.064 |
| SRR8749029 | MeJA induced 9h | 0.174 |
| SRR8749030 | Uninduced | 0.129 |
| SRR8749031 | Uninduced | 0.627 |
| SRR8749032 | Uninduced | 0.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.054 |
| SRR8400027 | Control-Root | 0.944 |