Gene detail information of Glyur000022s00002010.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54680.1 | 9.00E-58 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004505433.1 | 8.00E-155 | PREDICTED: transcription factor ILR3-like [Cicer arietinum] |
| Swissprot | tr|Q9FH37|ILR3_ARATH | 3.00E-113 | Transcription factor ILR3 |
| trEMBL | tr|B7FHK4|B7FHK4_MEDTR | 4.00E-153 | Uncharacterized protein {ECO:0000313|EMBL:AFK34575.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 249589 | 253769 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002010.1 | PF00010.21 | HLH | 81 | 128 | 9.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.006 |
| SRR1783600 | control | 51.016 |
| SRR1783602 | moderate drought stress | 38.830 |
| SRR1811619 | moderate drought stress | 38.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 39.224 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.787 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 66.881 |
| SRR2868004 | Drought Stress(Tissue:root) | 93.630 |
| SRR2967015 | Control (Tissue:root) | 79.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.440 |
| SRR9715740 | Leave | 44.927 |
| SRR9715741 | Leave | 50.649 |
| SRR9715739 | Root | 48.924 |
| SRR9715742 | Root | 44.761 |
| SRR9715743 | Root | 41.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 95.376 |
| SRR8749028 | MeJA induced 9h | 75.124 |
| SRR8749029 | MeJA induced 9h | 120.130 |
| SRR8749030 | Uninduced | 75.159 |
| SRR8749031 | Uninduced | 81.210 |
| SRR8749032 | Uninduced | 104.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 55.442 |
| SRR8400027 | Control-Root | 51.485 |