Gene detail information of Glyur000022s00002021.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54630.1 | 4.00E-153 | zinc finger protein-related |
| NR | XP_003607708.1 | 0 | C2H2 zinc finger protein [Medicago truncatula] |
| trEMBL | tr|G7JF39|G7JF39_MEDTR | 0 | C2H2-like zinc finger protein {ECO:0000313|EMBL:AES89905.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 299530 | 301961 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.667 |
| SRR1783600 | control | 5.693 |
| SRR1783602 | moderate drought stress | 4.991 |
| SRR1811619 | moderate drought stress | 4.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.952 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.516 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.513 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.982 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.463 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.101 |
| SRR2967015 | Control (Tissue:root) | 17.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.104 |
| SRR9715740 | Leave | 4.637 |
| SRR9715741 | Leave | 4.942 |
| SRR9715739 | Root | 4.229 |
| SRR9715742 | Root | 5.397 |
| SRR9715743 | Root | 4.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.990 |
| SRR8749028 | MeJA induced 9h | 8.592 |
| SRR8749029 | MeJA induced 9h | 9.972 |
| SRR8749030 | Uninduced | 6.696 |
| SRR8749031 | Uninduced | 6.095 |
| SRR8749032 | Uninduced | 6.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.969 |
| SRR8400027 | Control-Root | 15.265 |