Gene detail information of Glyur000022s00002050.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39660.2 | 3.00E-73 | cycling DOF factor 2 |
| NR | XP_004505416.1 | 0 | PREDICTED: cyclic dof factor 2-like [Cicer arietinum] |
| Swissprot | tr|Q93ZL5|CDF2_ARATH | 2.00E-90 | Cyclic dof factor 2 |
| trEMBL | tr|G7JG96|G7JG96_MEDTR | 0 | DOF-type zinc finger DNA-binding family protein {ECO:0000313|EMBL:AES89945.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 432862 | 436823 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002050.1 | PF02701.10 | zf-Dof | 124 | 184 | 4.30E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.683 |
| SRR1783600 | control | 3.603 |
| SRR1783602 | moderate drought stress | 4.895 |
| SRR1811619 | moderate drought stress | 4.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.901 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.887 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.870 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.790 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.854 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.069 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.369 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.699 |
| SRR2967015 | Control (Tissue:root) | 15.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.716 |
| SRR9715740 | Leave | 9.640 |
| SRR9715741 | Leave | 8.634 |
| SRR9715739 | Root | 0.418 |
| SRR9715742 | Root | 3.181 |
| SRR9715743 | Root | 2.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.210 |
| SRR8749028 | MeJA induced 9h | 12.311 |
| SRR8749029 | MeJA induced 9h | 8.191 |
| SRR8749030 | Uninduced | 20.973 |
| SRR8749031 | Uninduced | 20.801 |
| SRR8749032 | Uninduced | 13.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.312 |
| SRR8400027 | Control-Root | 3.497 |