Gene detail information of Glyur000022s00002064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26760.1 | 3.00E-159 | SET domain protein 35 |
| NR | XP_004505410.1 | 0 | PREDICTED: uncharacterized protein LOC101509103 [Cicer arietinum] |
| Swissprot | tr|Q5PP37|ATXR2_ARATH | 6.00E-08 | Histone-lysine N-methyltransferase ATXR2 |
| trEMBL | tr|G7JG98|G7JG98_MEDTR | 0 | TPR domain protein {ECO:0000313|EMBL:AES89947.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 496783 | 498393 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002064.1 | PF13414.1 | TPR_11 | 10 | 94 | 5.40E-08 |
| Glyur000022s00002064.1 | PF00856.23 | SET | 312 | 363 | 5.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.869 |
| SRR1783600 | control | 2.806 |
| SRR1783602 | moderate drought stress | 0.859 |
| SRR1811619 | moderate drought stress | 0.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.533 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.202 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.667 |
| SRR2967015 | Control (Tissue:root) | 6.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.838 |
| SRR9715740 | Leave | 0.377 |
| SRR9715741 | Leave | 0.230 |
| SRR9715739 | Root | 0.599 |
| SRR9715742 | Root | 0.410 |
| SRR9715743 | Root | 0.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.256 |
| SRR8749028 | MeJA induced 9h | 9.106 |
| SRR8749029 | MeJA induced 9h | 6.863 |
| SRR8749030 | Uninduced | 4.214 |
| SRR8749031 | Uninduced | 7.714 |
| SRR8749032 | Uninduced | 4.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.369 |
| SRR8400027 | Control-Root | 3.781 |