Gene detail

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Gene detail information of Glyur000022s00002065.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G04660.1	anaphase-promoting complex/cyclosome 2
NR	AES89948.2	anaphase promoting complex subunit 2 [Medicago truncatula]
Swissprot	tr\|Q8H1U5\|APC2_ARATH	Anaphase-promoting complex subunit 2
trEMBL	tr\|G7JG99\|G7JG99_MEDTR	Anaphase promoting complex subunit 2 {ECO:0000313\|EMBL:AES89948.2}

Sequence

Transcript Sequence

>Glyur000022s00002065.1
AAAGAGGGGGAAACAACCAGACCCAGTGACCAGTGTGGCAGTGACAGTGAGCAAAAACAATGGTCAATTGTTGAGGACTCGAATTCGAACTCGACTGACCCACCCACGAGTGTCACCACTCCTCTCACGGCCAACATGTCCTTCACCAACCTAGGGATTTTGGACTCTCACACCCAAGACTCAGTCCGCGAAATCCTCCACAGCTACAACGCCTTCTGCAGCGCCACACAGTCTCTTCTCACCGGCGCCGGCGACCTCTCCGTCGGCGCCGACTTCGTTTCTCACGTTCACGCCCTCTGCAAACACGGCCTCGACTCACTCGTCCGCGACCACTTTCTCCGAGTCTTAGAGGAAACGTTTGAACGAAATGGGGCGTCGAGGTTTTGGCGGCACTTTGATCCTTACGCTGATGTTGTTTGTCTGAACAGGAATGATGATCTCCATATTGACGAGGATGAGATTCAGGGTGTGTTGTATAATGCTTTGGAAGAAATCTCTTTGGAGAAACAGTATCAGGGGAAGTGCCTGTTAATGTTTGTCCATGCTTTACAGTCTTACAAGGATCAAATGTCAGAGGAAAGGGATAGTTTTGAAGCTGAAAGGAGTTACCTTATCTCTAAGTATCAATGGATTGTCTCTTCTGTGCTTATGGCTACACTTCCTCGAGTTTTCCCTGTTATACTGCATTGGTACTTTAAAAGAAGACTGGAGGAGTTAAGTACAATCATGGATGGAGAGTTCCATGATGATGTATCTCAAAATAAGGATGGCATGGATTTAGATGAAAAGGGAAAAACATGCAACAAGGTTGGTGAAATGGATGTTGATGAGTGCTATAACAACCATAGGTTCTCAGAAAACAGTAGACTGGTGAAGAACATTGGAAAAGTTGTTCTTGATCTTAGAAGTCTTGGATTTACTTCTATGGCTGAAGATGCTTACGCTTCTGCTATATTTTTACTACTAAAGGCAAAAGTATATAATGTAGCTGGAGATGATTTTAGGAGTTCTGTTTTACAATCTATTCAAAGCTGGATACAGGCTGTTCCTCTCCAGTTTCTGCATGCCCTTCTTGTCTATCTTGGTGACTCTGTTAGTTATGAAAGTACTTCATCAGGTCTCAAATCTCCTTTAGCACCACAACCATCATCATGCTGTCCTGGAATTGATACTCCCTCTGAAGGGCTTGTCAGATGGAAGTTGCGGCTGGAATATTTTGCTTATGAAACACTACAAGATTTAAGAATTGCCAAATTATTTGAGATAATTGTTGATTATCCNGAGAGCTCTCCTGCAATTGACGACTTAAAACTCTGTCTTGAATACACTGGACAACACTCAAAGCTGGTGGAGTCATTTATTTCTGCACTGCGTTATCGCCTTCTTACTGCAGGCGCATCAACCAATGATATATTACACCAATATGTTTCAACTATTAAAGCCCTAAGGACAATAGACCCTGCAGGTGTTTTCCTTGAGGCAGTTGGTGAACCAATAAGGGATTATTTAAGAGGGAGGAGGGATACAATAAAATGCATAGTGACCATGCTGACAGATGGGACGGGTGGAAATTCAAGTGCATCTGGAAATCCTGGAGATAGCCTTCTTGAAGAGTTGAACAGAGATGAAGAAATTCAGGAGAATACTGGCATCGATGATGATTTTAACACTGATGATAGGCAAGCTTGGATCAATGCCACACGATGGCAACCTGACCCTGTGGAAGCAGATCCATTGAAGGGAAGCAGAAACCAAAGGAAGGTTGACATACTTGGNATGATTGTTGGCATAATTGGTTCAAAAGATCAATTAGTTCATGAATATCGAACTATGCTCGCTGAGAAACTTCTAAACAAATCTGATTACGATATTGACTCAGAGTTACGCACTCTAGAACTCCTTAAGATACACTTCGGAGAGAGCAGCCTACAGAAATGTGAAATTATGCTGAATGATCTAATTGGCTCAAAGAGAACCAACACTAACATTAAAGCTACCATAAGCCAGCCATCTCGGACAAGTGTTGACATTGAAGACAATGCAATATCCATGGACACAATTTCTGCCACTATCATATCTTCTAATTTCTGGCCTCCAATACAGGATGAGCCCCTTAACCTGCCTGAACCTGTTGACCAGCTCCTCTCTGATTATGCAAAGAGATTTAATGAAATCAAAACACCCCGTAAGCTTCAGTGGAAAAAAAGTCTTGGGACTGTCAAGCTAGAGCTGCAGTTTGAAGATAGGGTAATGCAATTCACAGTTACCCCTGTTCACGCATCTATCGTTATGAAATTTCAAGATCAAACTAGTTGGACCTCTAAAAACCTTGCGGCTGCTATTGGGATACCTGTGGATGTACTAAATAGGAGAATAAATTTCTGGATAAGCAAGGGGGTCATNGCAGAGTCGCAAGGGGGAGATTCCTCTGACCATGTATACACCATTATGGAAAGCATGGTTGAGACAAGTAAGAANGGAGGCAGCAGTGGCAGTACTCAGGAACTTCTTGGAGGCGATGAGGAGGAGGAGAGATCCGTGGCCTCTGTAGAAAATCAACTTCGGAAGGAGATGACTGTGTATGAGAAATTTATCATGGGAATGCTCACAAACTTTGGTAGCATGGCATTAGATCGCATTCACAANACTCTCAAGATGTTTTGCATCGCCGATCCCCCGTATGACAAGTCACTCCAACAACTACAAAGCTTTTTATCCGGTCTAGTCTCCGAGGAGAAGTTAGAACTTCGGGATGGAATGTACTTTCTAAAGAAGTAGTGGGCTTGNGGAATGGAAACCATCCTTTTGGTCATAAGCTTTGAGCATAAAAGGTCCTGGCTATTCACTGATAAACTTTTAAGGTAGACAGCAACTTGAGGCCCACTTATTATTGGCATTCTTGGCAAGTCATTCTTGTGATTTCAGTAGTACCAATGTGACACAAATTTTGAAGACATCATCNGTTTCTGTCATCGCGTGTTTCTGGTTTGCCAACTATTTTCCAAAGCCGCATCTTTTCTGATATTTTCAATTTTCAATGTGTCTGTCACCTGTACGTGATTTTGTAGGACTTATTTAACGTATTGGATAAATTAAATCGAATAGGAAAAGTTATCTTATATTTATGCAGTGTTTCTTGTACATATCAAGTAGAATCGTATGACATTTTTTACATAACTCTATTCGGCCTTAGAACAAAAGTGTGATGAGTCATGAGACTGGATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	499331	506264	-

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002065.1	PF00888.17	Cullin	583	804	2.70E-58
Glyur000022s00002065.1	PF08672.6	APC2	864	921	6.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.470
SRR1783600	control	15.466
SRR1783602	moderate drought stress	19.795
SRR1811619	moderate drought stress	19.800

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.869
DRR006520	Root Summer glycyrrhizin high producing strain	13.679
DRR006521	Root Winter glycyrrhizin high producing strain	3.667
DRR006522	Root Winter glycyrrhizin high producing strain	3.182
DRR006523	Root Summer glycyrrhizin low producing strain	11.279
DRR006524	Root Summer glycyrrhizin low producing strain	11.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.458
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.529

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.142
SRR2868004	Drought Stress(Tissue:root)	12.406
SRR2967015	Control (Tissue:root)	14.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.927
SRR9715740	Leave	5.869
SRR9715741	Leave	4.469
SRR9715739	Root	2.944
SRR9715742	Root	8.867
SRR9715743	Root	7.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.453
SRR8749028	MeJA induced 9h	9.844
SRR8749029	MeJA induced 9h	7.088
SRR8749030	Uninduced	1.460
SRR8749031	Uninduced	0.340
SRR8749032	Uninduced	1.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.321
SRR8400027	Control-Root	15.908