Gene detail information of Glyur000022s00002071.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14020.1 | 0 | O-fucosyltransferase family protein |
| NR | KEH30793.1 | 0 | O-fucosyltransferase family protein [Medicago truncatula] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 5.00E-94 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072UP41|A0A072UP41_MEDTR | 0 | O-fucosyltransferase family protein {ECO:0000313|EMBL:KEH30793.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 531173 | 536407 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002071.1 | PF10250.4 | O-FucT | 100 | 419 | 1.40E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.109 |
| SRR1783600 | control | 8.244 |
| SRR1783602 | moderate drought stress | 7.371 |
| SRR1811619 | moderate drought stress | 7.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.843 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.641 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.652 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.041 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.959 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.390 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.365 |
| SRR2967015 | Control (Tissue:root) | 13.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.070 |
| SRR9715740 | Leave | 14.890 |
| SRR9715741 | Leave | 11.287 |
| SRR9715739 | Root | 3.787 |
| SRR9715742 | Root | 9.248 |
| SRR9715743 | Root | 9.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.313 |
| SRR8749028 | MeJA induced 9h | 12.945 |
| SRR8749029 | MeJA induced 9h | 13.152 |
| SRR8749030 | Uninduced | 10.850 |
| SRR8749031 | Uninduced | 11.979 |
| SRR8749032 | Uninduced | 12.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.537 |
| SRR8400027 | Control-Root | 16.906 |