Gene detail information of Glyur000023s00004880.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46510.1 | 3.00E-106 | plant U-box 13 |
| NR | XP_003518436.1 | 0 | PREDICTED: U-box domain-containing protein 13-like [Glycine max] |
| COG | YP_001957949.1 | 6.00E-17 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SNC6|PUB13_ARATH | 1.00E-132 | U-box domain-containing protein 13 |
| trEMBL | tr|V7B851|V7B851_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW13740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 73334 | 75430 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004880.1 | PF04564.10 | U-box | 291 | 361 | 1.30E-22 |
| Glyur000023s00004880.1 | PF00514.18 | Arm | 440 | 477 | 8.30E-09 |
| Glyur000023s00004880.1 | PF00514.18 | Arm | 569 | 601 | 0.00019 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.521 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.139 |
| SRR2967015 | Control (Tissue:root) | 4.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.060 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.046 |
| SRR8749028 | MeJA induced 9h | 0.134 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.945 |
| SRR8749031 | Uninduced | 0.115 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.850 |
| SRR8400027 | Control-Root | 0.905 |